Gene detail

Detailed information of g8660.t1 in Acropora digitifera

Genomic Location: chr4Alt:11628761...11634423
NR annotation: CAH3026544.1, unnamed protein product [Porites evermanni]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35285	Ras-related protein Rab-22A OS=Mus musculus OX=10090 GN=Rab22a PE=1 SV=2
Q9UL26	Ras-related protein Rab-22A OS=Homo sapiens OX=9606 GN=RAB22A PE=1 SV=2
P51154	Ras-related protein Rab-22A OS=Canis lupus familiaris OX=9615 GN=RAB22A PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR050227 all species →	Family	Ras-related protein Rab	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977 all species →	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07891	RAB22; Ras-related protein Rab-22	-	GTP-binding proteins	ko04031	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g8660.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

102.7Max TPM

86.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	86.16	102.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	102.68
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	100.71
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	98.79
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	97.59
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	97.43
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	97.31
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	97.24
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	95.19
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	94.50
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	94.28
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	93.88
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	92.25
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	91.80
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	87.90
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	87.67
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	87.05
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	86.66
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	86.35
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	85.88
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	85.32
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	85.09
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	84.41
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	82.68
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	82.24
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	82.01
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	81.63
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	80.67
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	80.33
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	79.09
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	78.75
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	77.74
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	77.70
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	77.44
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	77.03
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	76.98
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	75.88
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	74.49
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	73.64
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	71.91

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.