Detailed information of g8670.t1 in Acropora digitifera

Genomic Location: chr4Alt:11720488...11726012
NR annotation: XP_029204241.1, collagen alpha-1(XVII) chain [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02140
all species →		Gal_LectinGalactose binding lectin domainDomainInterproscan
PF01391
all species →		CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050632
all species →		FamilyNematode Cuticular CollagenInterproscan
IPR000922
all species →		DomainD-galactoside/L-rhamnose binding SUEL lectin domainInterproscan
IPR008160
all species →		RepeatCollagen triple helix repeatInterproscan
IPR043159
all species →		Homologous_superfamilyD-galactoside/L-rhamnose binding SUEL lectin domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24637
all species →		COLLAGENInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0030246
all species →		Molecular Functioncarbohydrate bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01047PLA2G, SPLA2; secretory phospholipase A2EC:3.1.1.4
Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP