Gene detail

Detailed information of g868.t2 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047127447.1, afadin [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55196	Afadin OS=Homo sapiens OX=9606 GN=AFDN PE=1 SV=3
Q9QZQ1	Afadin OS=Mus musculus OX=10090 GN=Afdn PE=1 SV=3
O35889	Afadin OS=Rattus norvegicus OX=10116 GN=Afdn PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004405 (this species only)
Orthogroup (gene family)	OG0005692 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03959 all species →	FSH1	Serine hydrolase (FSH1)	Domain	Interproscan
PF01843 all species →	DIL	DIL domain	Repeat	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF00498 all species →	FHA	FHA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050593 all species →	Family	Lovastatin nonaketide synthase thioesterase	Interproscan
IPR005645 all species →	Domain	Serine hydrolase domain	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR002710 all species →	Domain	Dilute domain	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR028842 all species →	Family	Afadin	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR037977 all species →	Domain	Afadin, cargo binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48070 all species →	ESTERASE OVCA2	Interproscan
PTHR10398 all species →	AFADIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0032526 all species →	Biological Process	response to retinoic acid	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0032880 all species →	Biological Process	regulation of protein localization	Interproscan
GO:0050839 all species →	Molecular Function	cell adhesion molecule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g868.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.