Gene detail

Detailed information of g869.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MBL0691303.1, flagellar motor switch protein FliG [SAR324 cluster bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WY63	Flagellar motor switch protein FliG OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=fliG PE=1 SV=1
P23448	Flagellar motor switch protein FliG OS=Bacillus subtilis (strain 168) OX=224308 GN=fliG PE=3 SV=1
Q9X4Q9	Flagellar motor switch protein FliG OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=fliG PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000005 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000009 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000284 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000797 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001556 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002339 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0030266 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0033322 (this species only) · gene tree & orthology
Transcription factor family	THAP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14529 all species →	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF01762 all species →	Galactosyl_T	Galactosyltransferase	Family	Interproscan
PF13409 all species →	GST_N_2	Glutathione S-transferase, N-terminal domain	Domain	Interproscan
PF13410 all species →	GST_C_2	Glutathione S-transferase, C-terminal domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF14841 all species →	FliG_M	FliG middle domain	Family	Interproscan
PF01706 all species →	FliG_C	FliG C-terminal domain	Domain	Interproscan
PF14842 all species →	FliG_N	FliG N-terminal domain	Family	Interproscan
PF05485 all species →	THAP	THAP domain	Domain	Interproscan
PF00328 all species →	His_Phos_2	Histidine phosphatase superfamily (branch 2)	Family	Interproscan
PF18701 all species →	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR002659 all species →	Family	Glycosyl transferase, family 31	Interproscan
IPR016639 all species →	Family	Glutathione S-transferase Omega/GSH	Interproscan
IPR004045 all species →	Domain	Glutathione S-transferase, N-terminal	Interproscan
IPR010987 all species →	Domain	Glutathione S-transferase, C-terminal-like	Interproscan
IPR036282 all species →	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan
IPR040079 all species →	Family	Glutathione transferase family	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR047047 all species →	Domain	Glutathione S-transferases Omega-like, C-terminal	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR032779 all species →	Domain	Flagellar motor switch protein FliG, middle domain	Interproscan
IPR011002 all species →	Homologous_superfamily	Flagellar motor switch protein FliG, alpha-helical	Interproscan
IPR023087 all species →	Domain	Flagellar motor switch protein FliG, C-terminal	Interproscan
IPR000090 all species →	Family	Flagellar motor switch protein FliG	Interproscan
IPR028263 all species →	Domain	Flagellar motor switch protein FliG, N-terminal domain	Interproscan
IPR006612 all species →	Domain	THAP-type zinc finger	Interproscan
IPR052224 all species →	Family	THAP domain-containing protein	Interproscan
IPR000560 all species →	Family	Histidine phosphatase superfamily, clade-2	Interproscan
IPR029033 all species →	Homologous_superfamily	Histidine phosphatase superfamily	Interproscan
IPR033379 all species →	Active_site	Histidine acid phosphatase active site	Interproscan
IPR050645 all species →	Family	Histidine Acid Phosphatase	Interproscan
IPR040676 all species →	Domain	Domain of unknown function DUF5641	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11214 all species →	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE	Interproscan
PTHR32419 all species →	GLUTATHIONYL-HYDROQUINONE REDUCTASE	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR30534 all species →	FLAGELLAR MOTOR SWITCH PROTEIN FLIG	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46927 all species →	AGAP005574-PA	Interproscan
PTHR11567 all species →	ACID PHOSPHATASE-RELATED	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0006024 all species →	Biological Process	glycosaminoglycan biosynthetic process	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016758 all species →	Molecular Function	hexosyltransferase activity	Interproscan
GO:0035250 all species →	Molecular Function	UDP-galactosyltransferase activity	Interproscan
GO:0004364 all species →	Molecular Function	glutathione transferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0006935 all species →	Biological Process	chemotaxis	Interproscan
GO:0009288 all species →	Cellular Component	bacterial-type flagellum	Interproscan
GO:0071973 all species →	Biological Process	bacterial-type flagellum-dependent cell motility	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02410	fliG; flagellar motor switch protein FliG	-	Bacterial motility proteins	ko02035	deepkoala
K07393	ECM4, yqjG; glutathionyl-hydroquinone reductase	EC:1.8.5.7	Enzymes with EC numbers	-	deepkoala
K14410	ACP2; lysosomal acid phosphatase	EC:3.1.3.2	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →