Detailed information of g874.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: NQU63518.1, 16S rRNA (uracil(1498)-N(3))-methyltransferase [SAR324 cluster bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P0AGL8Ribosomal RNA small subunit methyltransferase E OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=rsmE PE=3 SV=1
P0AGL7Ribosomal RNA small subunit methyltransferase E OS=Escherichia coli (strain K12) OX=83333 GN=rsmE PE=1 SV=1
P0AGL9Ribosomal RNA small subunit methyltransferase E OS=Shigella flexneri OX=623 GN=rsmE PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14750INTS2Integrator complex subunit 2FamilyInterproscan
PF04452Methyltrans_RNARNA methyltransferase domainDomainInterproscan
PF02562PhoHPhoH-like proteinDomainInterproscan
PF04083Abhydro_lipasePartial alpha/beta-hydrolase lipase regionFamilyInterproscan
PF12763EF-hand_4Cytoskeletal-regulatory complex EF handFamilyInterproscan
PF18150DUF5600Domain of unknown function (DUF5600)DomainInterproscan
PF00858ASCAmiloride-sensitive sodium channelFamilyInterproscan
PF02493MORNMORN repeatRepeatInterproscan
PF01833TIGIPT/TIG domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029321FamilyIntegrator complex subunit 2Interproscan
IPR026236FamilyIntegrator complex subunit 2, metazoaInterproscan
IPR029028Homologous_superfamilyAlpha/beta knot methyltransferasesInterproscan
IPR006700FamilyRibosomal RNA small subunit methyltransferase EInterproscan
IPR029026Homologous_superfamilytRNA (guanine-N1-)-methyltransferase, N-terminalInterproscan
IPR046886DomainRibosomal RNA small subunit methyltransferase E, methyltransferase domainInterproscan
IPR015947Homologous_superfamilyPUA-like superfamilyInterproscan
IPR003714DomainPhoH-like proteinInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR051451FamilyPhosphate metabolism PhoH-likeInterproscan
IPR029058Homologous_superfamilyAlpha/Beta hydrolase foldInterproscan
IPR006693DomainPartial AB-hydrolase lipase domainInterproscan
IPR000261DomainEH domainInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR040990DomainDomain of unknown function DUF5600Interproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR001873FamilyEpithelial sodium channelInterproscan
IPR003409RepeatMORN repeatInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR002909DomainIPT domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR28608INTEGRATOR COMPLEX SUBUNIT 2Interproscan
PTHR30027RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE EInterproscan
PTHR30473PROTEIN PHOHInterproscan
PTHR11005LYSOSOMAL ACID LIPASE-RELATEDInterproscan
PTHR11216EH DOMAINInterproscan
PTHR11690AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATEDInterproscan
PTHR43215RADIAL SPOKE HEAD 1 HOMOLOGInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0032039Cellular Componentintegrator complexInterproscan
GO:0034472Biological ProcesssnRNA 3'-end processingInterproscan
GO:0016180Biological ProcesssnRNA processingInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0070042Molecular FunctionrRNA (uridine-N3-)-methyltransferase activityInterproscan
GO:0070475Biological ProcessrRNA base methylationInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006629Biological Processlipid metabolic processInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006897Biological ProcessendocytosisInterproscan
GO:0016197Biological Processendosomal transportInterproscan
GO:0005272Molecular Functionsodium channel activityInterproscan
GO:0006814Biological Processsodium ion transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0015280Molecular Functionligand-gated sodium channel activityInterproscan
GO:0035725Biological Processsodium ion transmembrane transportInterproscan
GO:0005829Cellular ComponentcytosolInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06217phoH, phoL; phosphate starvation-inducible protein PhoH and related proteins-Ribosome biogenesisko03009deepkoala
Signaling proteins-deepkoala

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