Detailed information of g875.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: PCI28766.1, DNA-directed RNA polymerase subunit beta' [SAR324 cluster bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q39Y12DNA-directed RNA polymerase subunit beta' OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=rpoC PE=3 SV=1
C6E4R3DNA-directed RNA polymerase subunit beta' OS=Geobacter sp. (strain M21) OX=443144 GN=rpoC PE=3 SV=1
B3E7S9DNA-directed RNA polymerase subunit beta' OS=Trichlorobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) OX=398767 GN=rpoC PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00113Enolase_CEnolase, C-terminal TIM barrel domainDomainInterproscan
PF03952Enolase_NEnolase, N-terminal domainDomainInterproscan
PF04849HAP1_NHAP1 N-terminal conserved regionFamilyInterproscan
PF13409GST_N_2Glutathione S-transferase, N-terminal domainDomainInterproscan
PF14497GST_C_3Glutathione S-transferase, C-terminal domainDomainInterproscan
PF10408Ufd2P_coreUbiquitin elongating factor coreFamilyInterproscan
PF12556CobS_NCobaltochelatase CobS subunit N terminal FamilyInterproscan
PF07728AAA_5AAA domain (dynein-related subfamily)DomainInterproscan
PF000027tm_27 transmembrane receptor (Secretin family)FamilyInterproscan
PF04983RNA_pol_Rpb1_3RNA polymerase Rpb1, domain 3DomainInterproscan
PF00623RNA_pol_Rpb1_2RNA polymerase Rpb1, domain 2DomainInterproscan
PF05000RNA_pol_Rpb1_4RNA polymerase Rpb1, domain 4DomainInterproscan
PF04997RNA_pol_Rpb1_1RNA polymerase Rpb1, domain 1DomainInterproscan
PF04998RNA_pol_Rpb1_5RNA polymerase Rpb1, domain 5DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020810DomainEnolase, C-terminal TIM barrel domainInterproscan
IPR029017Homologous_superfamilyEnolase-like, N-terminalInterproscan
IPR000941FamilyEnolaseInterproscan
IPR020809Conserved_siteEnolase, conserved siteInterproscan
IPR036849Homologous_superfamilyEnolase-like, C-terminal domain superfamilyInterproscan
IPR020811DomainEnolase, N-terminalInterproscan
IPR027350DomainGlycosyltransferase family 23 (GT23) domainInterproscan
IPR006933DomainHAP1, N-terminalInterproscan
IPR051946FamilyIntracellular Trafficking RegulatorInterproscan
IPR005955FamilyGlutathione S-transferases, class ZetaInterproscan
IPR036282Homologous_superfamilyGlutathione S-transferase, C-terminal domain superfamilyInterproscan
IPR004045DomainGlutathione S-transferase, N-terminalInterproscan
IPR004046DomainGlutathione S-transferase, C-terminalInterproscan
IPR040079FamilyGlutathione transferase familyInterproscan
IPR010987DomainGlutathione S-transferase, C-terminal-likeInterproscan
IPR034330DomainGlutathione S-transferases, class Zeta , C-terminalInterproscan
IPR034333DomainGlutathione S-transferases, class Zeta , N-terminalInterproscan
IPR036249Homologous_superfamilyThioredoxin-like superfamilyInterproscan
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR045132FamilyUbiquitin conjugation factor E4Interproscan
IPR019474DomainUbiquitin conjugation factor E4, coreInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR050764FamilyCbbQ/NirQ/NorQ/GpvNInterproscan
IPR025865DomainCobaltochelatase subunit CobS N-terminal domainInterproscan
IPR011704DomainATPase, dynein-related, AAA domainInterproscan
IPR000832FamilyGPCR, family 2, secretin-likeInterproscan
IPR007066DomainRNA polymerase Rpb1, domain 3Interproscan
IPR006592DomainRNA polymerase, N-terminalInterproscan
IPR012754FamilyDNA-directed RNA polymerase, subunit beta-prime, bacterial typeInterproscan
IPR000722DomainRNA polymerase, alpha subunitInterproscan
IPR007083DomainRNA polymerase Rpb1, domain 4Interproscan
IPR045867FamilyDNA-directed RNA polymerase, subunit beta-primeInterproscan
IPR038120Homologous_superfamilyRNA polymerase Rpb1, funnel domain superfamilyInterproscan
IPR007080DomainRNA polymerase Rpb1, domain 1Interproscan
IPR044893Homologous_superfamilyRNA polymerase Rpb1, clamp domain superfamilyInterproscan
IPR042102Homologous_superfamilyRNA polymerase Rpb1, domain 3 superfamilyInterproscan
IPR007081DomainRNA polymerase Rpb1, domain 5Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11902ENOLASEInterproscan
PTHR33198ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR15751TRAFFICKING KINESIN-BINDING PROTEINInterproscan
PTHR42673MALEYLACETOACETATE ISOMERASEInterproscan
PTHR13931UBIQUITINATION FACTOR E4Interproscan
PTHR42759MOXR FAMILY PROTEINInterproscan
PTHR19376DNA-DIRECTED RNA POLYMERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000015Cellular Componentphosphopyruvate hydratase complexInterproscan
GO:0000287Molecular Functionmagnesium ion bindingInterproscan
GO:0004634Molecular Functionphosphopyruvate hydratase activityInterproscan
GO:0006096Biological Processglycolytic processInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006605Biological Processprotein targetingInterproscan
GO:0017022Molecular Functionmyosin bindingInterproscan
GO:0031410Cellular Componentcytoplasmic vesicleInterproscan
GO:0047496Biological Processvesicle transport along microtubuleInterproscan
GO:0048311Biological Processmitochondrion distributionInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0009072Biological Processaromatic amino acid metabolic processInterproscan
GO:0004364Molecular Functionglutathione transferase activityInterproscan
GO:0006559Biological ProcessL-phenylalanine catabolic processInterproscan
GO:0006749Biological Processglutathione metabolic processInterproscan
GO:0016034Molecular Functionmaleylacetoacetate isomerase activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0000151Cellular Componentubiquitin ligase complexInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0030433Biological Processobsolete ubiquitin-dependent ERAD pathwayInterproscan
GO:0034450Molecular Functionubiquitin-ubiquitin ligase activityInterproscan
GO:0036503Biological ProcessERAD pathwayInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01689ENO1_2_3, eno; enolase 1/2/3EC:4.2.1.11
DNA repair and recombination proteinsko03400deepkoala
Porphyrin metabolismko00860deepkoala
Styrene degradationko00643deepkoala
Exosomeko04147deepkoala

TOP