Gene detail

Detailed information of g8757.t1 in Montipora capitata

Genomic Location: Sc0000218:322418...356673
NR annotation: XP_044163515.1, LOW QUALITY PROTEIN: S phase cyclin A-associated protein in the endoplasmic reticulum-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8757.t1

atgggtgggcacccccaagcctccgattatcccagggatagaacaaccaaactagaaggtagaaagtctaaagctaagatgatgaataaaagacgcacatccacacctgagaagtctggctcttcagacagggaaggctcccctgcacagaagggaggtgccaaatcaccagggaggtctcgctcaggaagcaggaagctttctggttcattttcgggaaagaaaaatgatttgagagcccgttattggagctacctctttgataacctaaaaagggcagtggatgaaatctatggaacatgcgaggccgacgagagcattgttgaatgccaggaggttataatgatgttggaccagtgtcgtcgagatttcagtgctttgattgacagaataaatgtacaagatgcatttgagaaggcagattacaagaacaggccaacctcgcttgcttgggaagttagaaaatcttcgccaggcaaaaccttgttctcaagtgctcccgttttgcagtcgacattggataaaagtgccactagtccagtcctcagcctggatttcaattcacaggcagcttctccagtgaaccagtcgctaagtcaggcagccactccagggcatgtgcaatcttgggcagacaaagttcgtggaactacttcgagggggccgaatgtccctgctgttatgaaaagcacagtagcaatcaatggacccattgcaagttcagaatcgaagaattcttttggaaatgcagataatgaaaatgacacaggtgatgaagaaggctgggaaactgtacaccgtggcagaaagctacacggtattaattcacggaaaggaaacaagttctctcatgaccgtgtgccaagtggaaagccagacatgaaattaaaccattcaacgccggaaaattctctgaatggtgcaaattgcaatattgacgcgaatgaagttcatatcggcgaagatgctggtagtgagacaacttcaataccgttacaatttacggagaattcttcggaaataacccttgtccgtgaggtagaaacacctcctgaggacaacggcttggaagagcaggcttctttatcagacatcgagcacgagaaagcgctgtctgctgccacggagcaagaggagagtttgtccaagcaaattgaggaatgtcaaaaccagatgattgcctctgtgattgaactcgaggaaagcttggtcaaggaaattgcagaggaagaagaactggtgacagcaataaatggtgaaagcgagagtccaatttcggacatggagcagaaggaagaattcgaggatatcggtgaaatcggagaaagcgaccctttgaattgtagcggtaccacgaatggggatagtaccatgttgacaaactccgaaagtcctctgacatgggaagagatgatagccaagtacgatgcggagcattcgcctgaccaggagaacagctggggagatttagtggaacaagctgagaggctgcctgggcgagctgtgcatcttcaccagagactctcctcgccttcacgtaaaagaccactggaggaagtcattcgcattcatgaagaaaaacaaaaaaaagctcagcaacaaagggaaaggcgacttgaggaaagattgcagagtcttcaaattctctcggaaaaggtccaaaaagctcgtgagctcaaagacgaattggttcaacaacgtcagcaacatcttgacgagaagcagaggagagcggaacaacaaagattattggtgctgcaagagattgtacgaaaagctcaagaagaggacgcgaaggtgaatgaaattgccttcataaactcattggaagcgcagaataaaaaaattgaagtcctttcacgacatcagggtcatgaagcaaggctccaagatatccaagaggaacgccaaagaaaaaaagaagaacagcaggctaaagaggctgcagcgcaggagaggcgtcgtcagttagaagccgaaagattggcaagacttgaagaggtgcagctgaagaaacaggaacaggaagcgaagtacaagcgagagaaacatgaaagagagaaagcaagggaagaagcagcgaaagaaaaggcaagggaaagagagatgcgtattgcagcacgcaacgaagctttgcagaatgcaaccgaacaacttcaattgaaaatacaacaaaaggccgctagcgtgtcacgccattccacccaagatgaagttcctgctgtcacgccatatgaccggaagaagatttgtactctgtgcaacgttcagattgtgtctgaggtttatttgttgagtcatttgcgaggcaagaagcatcaagaagctttgtctgagattccaacgcagaaaggaacgccagaagacaaggacaccatatcgctgcaatacatcaaggaaatgtcaactgataaagctggtgaaactgagaaagccgatcaagaaaggcagaaggctcttcgaaaaagagcgaaaaagcttcgaacgagaatggcagccaaagggcgtgaatatgaaagtaatttatcgacttcagcacctcaacagcaggaatctgcaaagagatccaggttccagaaaattgtaaaagacgtaaatcgccaacttcagtgtcaagcctcgggtccgtggacggctaatcgtgtggcatcgctcgagcggtcacttggcgagatgagtaggctactagaatccagtgtaacagctgatcaggtgaccctctgtaatctcggtggattgacagctctcacaagggttcttctggtgccagacatcgctagtgacaagacgacagtcaagcccatcatcccgatcaaaactctttgtaatgttgctcacgtgatgagcctgtcctgtcgcgaatgcctggacaactgccgttacatggtctttacaaacaaactttcgacagtggtagatctactcgtttttcaaatgaagggtgtctttacatcacaaaacgcctcgaagaaatcttcagaaaaggaacccggaagtagttcgttaattcgctcgccttcagatcccttagctactgcgctgttgaaagtgttggctacagtgctaaaatgcttcgcaaccgcgtcgcctaaggagacagaggtcgcagcgttagttcagaggatggtggatttgattggctacgttgtgtgctccggtgtcgttgatgatatcaggtcgttcttcagtacaatacatggacctctcgatgacgatcctacaactgttgatttcgcccaagcttgtttatctctgttgtctgcaactgcacagtatctgggttcacgatcgagtaatattttcgagacaagaaaagaagaccccactcaatttgtcacgacattcaagcagaccgaacttgttgaaatcgtgtcgttcctttatgccattctgatgaacatggggagtgggcaatcgccaagctccgcgcttgcagaggcgactataaacgtgatcactgaggcgctctgtacgttgaattttatggcgacagtggatctgaatgttttgcaagtatctttgggagcagaaggtgtctctttagaattccggcacataatcagccatcttttgtgggtttgcagtgagggaaaaaacgaatatctccttcatgaagtgattttgattgtgggttattttacagttttgaactatgacaaccaggtgtttgttcaaactggaagacctccgacgttgctgcaacatctctgtttacttccttttcagtattttagcgacccaagacttcgaaacgtgttgtttccaacgttaatagctgcttgttttgaaaacgaagaaaacaaaaggattattgaacaagaagtgagctgcgcactgctggaaaactatgtcgaggagcaacttttagatgtgcagcacgatcaattgcttccatctcagagtcaacggcgttcagatggtaaggtctctcagcgttttgcactggtcaatagatttccactttcgaagtgggaacaagcaaggaaatttcttcttggatcctga

Transcript

g8757.t1

ATGGGTGGGCACCCCCAAGCCTCCGATTATCCCAGGGATAGAACAACCAAACTAGAAGGTAGAAAGTCTAAAGCTAAGATGATGAATAAAAGACGCACATCCACACCTGAGAAGTCTGGCTCTTCAGACAGGGAAGGCTCCCCTGCACAGAAGGGAGGTGCCAAATCACCAGGGAGGTCTCGCTCAGGAAGCAGGAAGCTTTCTGGTTCATTTtcgggaaagaaaaatgatTTGAGAGCCCGTTATTGGAGCTACCTCTTTGATAACCTAAAAAGGGCAGTGGATGAAATCTATGGAACATGCGAGGCCGACGAGAGCATTGTTGAATGCCAGGAGGTTATAATGATGTTGGACCAGTGTCGTCGAGATTTCAGTGCTTTGATTGACAGAATAAATGTACAAGATGCATTTGAGAAGGCAGATTACAAGAACAGGCCAACCTCGCTTGCTTGGGAAGTTAGAAAATCTTCGCCAGGCAAAACCTTGTTCTCAAGTGCTCCCGTTTTGCAGTCGACATTGGATAAAAGTGCCACTAGTCCAGTCCTCAGCCTGGATTTCAATTCACAGGCAGCTTCTCCAGTGAACCAGTCGCTAAGTCAGGCAGCCACTCCAGGGCATGTGCAATCTTGGGCAGACAAAGTTCGTGGAACTACTTCGAGGGGGCCGAATGTCCCTGCTGTTATGAAAAGCACAGTAGCAATCAATGGACCCATTGCAAGTTCAGAATCGAAGAATTCTTTTGGAAATGCAGATAATGAAAATGACACAGGTGATGAAGAAGGCTGGGAAACTGTACACCGTGGCAGAAAGCTACACGGTATTAATTCACGGAAAGGAAACAAGTTCTCTCATGACCGTGTGCCAAGTGGAAAGCCAGACATGAAATTAAACCATTCAACGCCGGAAAATTCTCTGAATGGTGCAAATTGCAATATTGACGCGAATGAAGTTCATATCGGCGAAGATGCTGGTAGTGAGACAACTTCAATACCGTTACAATTTACGGAGAATTCTTCGGAAATAACCCTTGTCCGTGAGGTAGAAACACCTCCTGAGGACAACGGCTTGGAAGAGCAGGCTTCTTTATCAGACATCGAGCACGAGAAAGCGCTGTCTGCTGCCACGGAGCAAGAGGAGAGTTTGTCCAAGCAAATTGAGGAATGTCAAAACCAGATGATTGCCTCTGTGATTGAACTCGAGGAAAGCTTGGTCAAGGAAATTGCAGAGGAAGAAGAACTGGTGACAGCAATAAATGGTGAAAGCGAGAGTCCAATTTCGGACATGGAGCAGAAGGAAGAATTCGAGGATATCGGTGAAATCGGAGAAAGCGACCCTTTGAATTGTAGCGGTACCACGAATGGGGATAGTACCATGTTGACAAACTCCGAAAGTCCTCTGACATGGGAAGAGATGATAGCCAAGTACGATGCGGAGCATTCGCCTGACCAGGAGAACAGCTGGGGAGATTTAGTGGAACAAGCTGAGAGGCTGCCTGGGCGAGCTGTGCATCTTCACCAGAGACTCTCCTCGCCTTCACGTAAAAGACCACTGGAGGAAGTCATTCGCATTCATGAAGAAAAACAAAAAAAAGCTCAGCAACAAAGGGAAAGGCGACTTGAGGAAAGATTGCAGAGTCTTCAAATTCTCTCGGAAAAGGTCCAAAAAGCTCGTGAGCTCAAAGACGAATTGGTTCAACAACGTCAGCAACATCTTGACGAGAAGCAGAGGAGAGCGGAACAACAAAGATTATTGGTGCTGCAAGAGATTGTACGAAAAGCTCAAGAAGAGGACGCGAAGGTGAATGAAATTGCCTTCATAAACTCATTGGAAGCGcagaataaaaaaattgaagtcCTTTCACGACATCAGGGTCATGAAGCAAGGCTCCAAGATATCCAAGAGGAAcgccaaagaaaaaaagaagaacagcAGGCTAAAGAGGCTGCAGCGCAGGAGAGGCGTCGTCAGTTAGAAGCCGAAAGATTGGCAAGACTTGAAGAGGTGCAGCTGAAGAAACAGGAACAGGAAGCGAAGTACAAGCGAGAGAAACATGAAAGAGAGAAAGCAAGGGAAGAAGCAGCGAAAGAAAAGGCAAGGGAAAGAGAGATGCGTATTGCAGCACGCAACGAAGCTTTGCAGAATGCAACCGAACAACTTCAATtgaaaatacaacaaaagGCCGCTAGCGTGTCACGCCATTCCACCCAAGATGAAGTTCCTGCTGTCACGCCATATGACCGGAAGAAGATTTGTACTCTGTGCAACGTTCAGATTGTGTCTGAGGTTTATTTGTTGAGTCATTTGCGAGGCAAGAAGCATCAAGAAGCTTTGTCTGAGATTCCAACGCAGAAAGGAACGCCAGAAGACAAGGACACCATATCGCTGCAATACATCAAGGAAATGTCAACTGATAAAGCTGGTGAAACTGAGAAAGCCGATCAAGAAAGGCAGAAGGCTCTTCGAAAAAGAGCGAAAAAGCTTCGAACGAGAATGGCAGCCAAAGGGCGTGAATATGAAAGTAATTTATCGACTTCAGCACCTCAACAGCAGGAATCTGCAAAGAGATCCAGGTTCCAGAAAATTGTAAAAGACGTAAATCGCCAACTTCAGTGTCAAGCCTCGGGTCCGTGGACGGCTAATCGTGTGGCATCGCTCGAGCGGTCACTTGGCGAGATGAGTAGGCTACTAGAATCCAGTGTAACAGCTGATCAGGTGACCCTCTGTAATCTCGGTGGATTGACAGCTCTCACAAGGGTTCTTCTGGTGCCAGACATCGCTAGTGACAAGACGACAGTCAAGCCCATCATCCCGATCAAAACTCTTTGTAATGTTGCTCACGTGATGAGCCTGTCCTGTCGCGAATGCCTGGACAACTGCCGTTACATGGTCTTTACAAACAAACTTTCGACAGTGGTAGATCTACTCGTTTTTCAAATGAAGGGTGTCTTTACATCACAAAACGCCTCGAAGAAATCTTCAGAAAAGGAACCCGGAAGTAGTTCGTTAATTCGCTCGCCTTCAGATCCCTTAGCTACTGCGCTGTTGAAAGTGTTGGCTACAGTGCTAAAATGCTTCGCAACCGCGTCGCCTAAGGAGACAGAGGTCGCAGCGTTAGTTCAGAGGATGGTGGATTTGATTGGCTACGTTGTGTGCTCCGGTGTCGTTGATGATATCAGGTCGTTCTTCAGTACAATACATGGACCTCTCGATGACGATCCTACAACTGTTGATTTCGCCCAAGCTTGTTTATCTCTGTTGTCTGCAACTGCACAGTATCTGGGTTCACGATCGAGTAATATTTTCGAGACAAGAAAAGAAGACCCCACTCAATTTGTCACGACATTCAAGCAGACCGAACTTGTTGaaATCGTGTCGTTCCTTTATGCCATTCTGATGAACATGGGGAGTGGGCAATCGCCAAGCTCCGCGCTTGCAGAGGCGACTATAAACGTGATCACTGAGGCGCTCTGTACGTTGAATTTTATGGCGACAGTGGATCTGAATGTTTTGCAAGTATCTTTGGGAGCAGAAGGTGTCTCTTTAGAATTCCGGCACATAATCAGCCATCTTTTGTGGGTTTGCAGTGAGGGAAAAAACGAATATCTCCTTCATGAAGTGATTTTGATTGTGGgttattttacagttttgaaCTATGACAACCAGGTGTTTGTTCAAACTGGAAGACCTCCGACGTTGCTGCAACATCTCTGTTTACTTCCTTTTCAGTATTTTAGCGACCCAAGactTCGAAACGTGTTGTTTCCAACGTTAATAGCTGCttgttttgaaaacgaagaaaacaaaaggaTTATTGAACAAGAAGTGAGCTGCGCACTGCTGGAAAACTATGTCGAGGAGCAACTTTTAGATGTGCAGCACGATCAATTGCTTCCATCTCAGAGTCAACGGCGTTCAGATGGTAAGGTCTCTCAGCGTTTTGCACTGGTCAATAGATTTCCACTTTCGAAGTGGGAACAAGCAAGGAAATTTCTTCTTGGATCCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BY12	S phase cyclin A-associated protein in the endoplasmic reticulum OS=Homo sapiens OX=9606 GN=SCAPER PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003403 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16501 all species →	SCAPER_N	S phase cyclin A-associated protein in the endoplasmic reticulum	Family	Interproscan
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032446 all species →	Domain	S phase cyclin A-associated protein in the endoplasmic reticulum, N-terminal	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31434 all species →	S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24869	SCAPER; S phase cyclin A-associated protein in the endoplasmic reticulum	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g8757.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

405.7Max TPM

151.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	143.23	347.97
whole organisms · low pH treatment	15	15	158.13	405.69
whole organisms · extra low pH treatment pH treatment	12	12	158.78	336.80

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	347.97
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	339.53
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	333.81
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	312.72
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	302.30
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	260.23
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	227.63
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	214.23
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	116.34
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	112.54
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	106.58
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	45.90
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	44.27
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	36.13
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	34.14
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	31.09
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	30.54
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	30.37
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	29.73
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	29.58
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	22.24
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	405.69
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	356.17
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	307.76
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	285.37
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	240.45
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	226.01
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	121.02
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	111.33
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	111.28
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	44.68
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	43.54
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	36.19
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	27.79
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	27.48
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	27.22
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	336.80
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	324.45
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	313.25
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	293.41
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	253.47
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	111.42
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	95.78
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	44.12
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	42.46
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	31.01
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	30.50
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	28.70

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.