Detailed information of g876.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MBT4287848.1, DNA-directed RNA polymerase subunit beta [Deltaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
A7HCH7DNA-directed RNA polymerase subunit beta OS=Anaeromyxobacter sp. (strain Fw109-5) OX=404589 GN=rpoB PE=3 SV=1
Q1D7U3DNA-directed RNA polymerase subunit beta OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=rpoB PE=3 SV=1
C6E4R4DNA-directed RNA polymerase subunit beta OS=Geobacter sp. (strain M21) OX=443144 GN=rpoB PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilyHomeobox
Transcription Factors FamilySAND

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06027SLC35FSolute carrier family 35FamilyInterproscan
PF00562RNA_pol_Rpb2_6RNA polymerase Rpb2, domain 6DomainInterproscan
PF04560RNA_pol_Rpb2_7RNA polymerase Rpb2, domain 7DomainInterproscan
PF04561RNA_pol_Rpb2_2RNA polymerase Rpb2, domain 2DomainInterproscan
PF10385RNA_pol_Rpb2_45RNA polymerase beta subunit external 1 domainDomainInterproscan
PF04563RNA_pol_Rpb2_1RNA polymerase beta subunitFamilyInterproscan
PF04565RNA_pol_Rpb2_3RNA polymerase Rpb2, domain 3DomainInterproscan
PF05046Img2Mitochondrial large subunit ribosomal protein (Img2)DomainInterproscan
PF14622Ribonucleas_3_3Ribonuclease-III-likeFamilyInterproscan
PF16878SIX1_SDTranscriptional regulator, SIX1, N-terminal SD domainDomainInterproscan
PF05920Homeobox_KNHomeobox KN domainFamilyInterproscan
PF01342SANDSAND domainFamilyInterproscan
PF12895ANAPC3Anaphase-promoting complex, cyclosome, subunit 3RepeatInterproscan
PF000017tm_17 transmembrane receptor (rhodopsin family)FamilyInterproscan
PF11775CobT_CCobalamin biosynthesis protein CobT VWA domainDomainInterproscan
PF06213CobTCobalamin biosynthesis protein CobTFamilyInterproscan
PF00486Trans_reg_CTranscriptional regulatory protein, C terminalDomainInterproscan
PF00072Response_regResponse regulator receiver domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052221FamilySLC35F Solute TransporterInterproscan
IPR009262FamilySolute carrier family 35 member SLC35F1/F2/F6Interproscan
IPR015712FamilyDNA-directed RNA polymerase, subunit 2Interproscan
IPR007121Conserved_siteRNA polymerase, beta subunit, conserved siteInterproscan
IPR037033Homologous_superfamilyDNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyInterproscan
IPR007120DomainDNA-directed RNA polymerase, subunit 2, hybrid-binding domainInterproscan
IPR007641DomainRNA polymerase Rpb2, domain 7Interproscan
IPR010243FamilyDNA-directed RNA polymerase beta subunit, bacterial-typeInterproscan
IPR014724Homologous_superfamilyRNA polymerase Rpb2, OB-foldInterproscan
IPR042107Homologous_superfamilyDNA-directed RNA polymerase, beta subunit, external 1 domain superfamilyInterproscan
IPR007642DomainRNA polymerase Rpb2, domain 2Interproscan
IPR019462DomainDNA-directed RNA polymerase, beta subunit, external 1 domainInterproscan
IPR007644DomainRNA polymerase, beta subunit, protrusionInterproscan
IPR037034Homologous_superfamilyRNA polymerase Rpb2, domain 2 superfamilyInterproscan
IPR007645DomainRNA polymerase Rpb2, domain 3Interproscan
IPR007740FamilyLarge ribosomal subunit protein mL49Interproscan
IPR036389Homologous_superfamilyRibonuclease III, endonuclease domain superfamilyInterproscan
IPR000999DomainRibonuclease III domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR031701DomainHomeobox protein SIX1, N-terminal SD domainInterproscan
IPR008422DomainHomeobox KN domainInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR000770DomainSAND domainInterproscan
IPR010919Homologous_superfamilySAND-like domain superfamilyInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR008365FamilyProstanoid receptorInterproscan
IPR000276FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR001789DomainSignal transduction response regulator, receiver domainInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR016032Homologous_superfamilySignal transduction response regulator, C-terminal effectorInterproscan
IPR001867DomainOmpR/PhoB-type DNA-binding domainInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR051928FamilyNorD/CobTInterproscan
IPR011006Homologous_superfamilyCheY-like superfamilyInterproscan
IPR025861DomainCobalamin biosynthesis protein CobT VWA domainInterproscan
IPR006538FamilyCobalt chelatase, CobT subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14233DUF914-RELATEDInterproscan
PTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2Interproscan
PTHR13477MITOCHONDRIAL 39S RIBOSOMAL PROTEIN L49Interproscan
PTHR10390HOMEOBOX PROTEIN SIXInterproscan
PTHR10417GLUCOCORTICOID MODULATORY ELEMENT-BINDING PROTEINInterproscan
PTHR12558CELL DIVISION CYCLE 16,23,27Interproscan
PTHR11866G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBERInterproscan
PTHR41248NORD PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016020Cellular ComponentmembraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0032549Molecular Functionribonucleoside bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0005762Cellular Componentmitochondrial large ribosomal subunitInterproscan
GO:0004525Molecular Functionribonuclease III activityInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005680Cellular Componentanaphase-promoting complexInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0007091Biological Processmetaphase/anaphase transition of mitotic cell cycleInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0031145Biological Processanaphase-promoting complex-dependent catabolic processInterproscan
GO:0051301Biological Processcell divisionInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006954Biological Processinflammatory responseInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0007189Biological Processadenylate cyclase-activating G protein-coupled receptor signaling pathwayInterproscan
GO:0007204Biological Processpositive regulation of cytosolic calcium ion concentrationInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0000160Biological Processphosphorelay signal transduction systemInterproscan
GO:0009236Biological Processcobalamin biosynthetic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15287SLC35F1_2; solute carrier family 35, member F1/2-DNA repair and recombination proteinsko03400deepkoala
Ribosomeko03011deepkoala
Transportersko02000deepkoala

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