Detailed information of g879.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MBU2511707.1, penicillin-binding protein 2 [bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
D0C8Z9Peptidoglycan D,D-transpeptidase MrdA OS=Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / JCM 6841 / CCUG 19606 / CIP 70.34 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81) OX=575584 GN=mrdA PE=1 SV=1
Q03524Stage V sporulation protein D OS=Bacillus subtilis (strain 168) OX=224308 GN=spoVD PE=1 SV=3
P08149Probable peptidoglycan D,D-transpeptidase PenA OS=Neisseria gonorrhoeae OX=485 GN=penA PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04136COG3_NConserved oligomeric Golgi complex subunit 3, N-terminalRepeatInterproscan
PF06032DUF917Protein of unknown function (DUF917), N-terminalDomainInterproscan
PF20906DUF917_CProtein of unknown function DUF917, C-terminalDomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF03717PBP_dimerPenicillin-binding Protein dimerisation domainDomainInterproscan
PF00905TranspeptidasePenicillin binding protein transpeptidase domainDomainInterproscan
PF00412LIMLIM domainDomainInterproscan
PF12130bMERB_domBivalent Mical/EHBP Rab binding domainDomainInterproscan
PF14770TMEM18Transmembrane protein 18FamilyInterproscan
PF03874RNA_pol_Rpb4RNA polymerase Rpb4FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR048320DomainConserved oligomeric Golgi complex subunit 3, N-terminalInterproscan
IPR007265FamilyConserved oligomeric Golgi complex, subunit 3Interproscan
IPR027479Homologous_superfamilyDUF917, N-terminal domain superfamilyInterproscan
IPR010318DomainDUF917, N-terminal domainInterproscan
IPR024071Homologous_superfamilyDUF917, C-terminal domain superfamilyInterproscan
IPR048350DomainDUF917, C-terminal domainInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR005311DomainPenicillin-binding protein, dimerisation domainInterproscan
IPR012338Homologous_superfamilyBeta-lactamase/transpeptidase-likeInterproscan
IPR050515FamilyBacterial Transpeptidases and Beta-LactamasesInterproscan
IPR001460DomainPenicillin-binding protein, transpeptidaseInterproscan
IPR036138Homologous_superfamilyPenicillin-binding protein, dimerisation domain superfamilyInterproscan
IPR017790FamilyPenicillin-binding protein 2Interproscan
IPR001781DomainZinc finger, LIM-typeInterproscan
IPR022735DomainbMERB domainInterproscan
IPR052771FamilyNeurotrophin-activated signaling adaptorInterproscan
IPR000836DomainPhosphoribosyltransferase domainInterproscan
IPR023031FamilyOrotate phosphoribosyltransferaseInterproscan
IPR004467DomainOrotate phosphoribosyl transferase domainInterproscan
IPR029057Homologous_superfamilyPhosphoribosyltransferase-likeInterproscan
IPR026721FamilyTransmembrane protein 18Interproscan
IPR028994Homologous_superfamilyIntegrin alpha, N-terminalInterproscan
IPR010997Homologous_superfamilyHRDC-like superfamilyInterproscan
IPR045222FamilyDNA-directed RNA polymerase II subunit Rpb4-likeInterproscan
IPR005574FamilyRNA polymerase subunit Rpb4/RPC9Interproscan
IPR038324Homologous_superfamilyRpb4/RPC9 superfamilyInterproscan
IPR006590DomainRNA polymerase Rpb4/RPC9, coreInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13302CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3Interproscan
PTHR30627PEPTIDOGLYCAN D,D-TRANSPEPTIDASEInterproscan
PTHR24206OS06G0237300 PROTEINInterproscan
PTHR24116KINASE D-INTERACTING SUBSTRATE OF 220 KDAInterproscan
PTHR19278OROTATE PHOSPHORIBOSYLTRANSFERASEInterproscan
PTHR46580SENSOR KINASE-RELATEDInterproscan
PTHR21297DNA-DIRECTED RNA POLYMERASE IIInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005801Cellular Componentcis-Golgi networkInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0006891Biological Processintra-Golgi vesicle-mediated transportInterproscan
GO:0007030Biological ProcessGolgi organizationInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0017119Cellular ComponentGolgi transport complexInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008658Molecular Functionpenicillin bindingInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0071555Biological Processcell wall organizationInterproscan
GO:0071972Molecular Functionpeptidoglycan L,D-transpeptidase activityInterproscan
GO:0009002Molecular Functionserine-type D-Ala-D-Ala carboxypeptidase activityInterproscan
GO:0009252Biological Processpeptidoglycan biosynthetic processInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0015629Cellular Componentactin cytoskeletonInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0051017Biological Processactin filament bundle assemblyInterproscan
GO:0019887Molecular Functionprotein kinase regulator activityInterproscan
GO:0030165Molecular FunctionPDZ domain bindingInterproscan
GO:0004588Molecular Functionorotate phosphoribosyltransferase activityInterproscan
GO:0006222Biological ProcessUMP biosynthetic processInterproscan
GO:0019856Biological Processpyrimidine nucleobase biosynthetic processInterproscan
GO:0006221Biological Processpyrimidine nucleotide biosynthetic processInterproscan
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0044237Biological Processobsolete cellular metabolic processInterproscan
GO:0005665Cellular ComponentRNA polymerase II, core complexInterproscan
GO:0006367Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0031369Molecular Functiontranslation initiation factor bindingInterproscan
GO:0034402Biological Processobsolete recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complexInterproscan
GO:0006352Biological ProcessDNA-templated transcription initiationInterproscan
GO:0030880Cellular ComponentRNA polymerase complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K22145TMEM18; transmembrane protein 18-Peptidoglycan biosynthesis and degradation proteinsko01011deepkoala
Pyrimidine metabolismko00240deepkoala
DNA repair and recombination proteinsko03400deepkoala
Transcription factorsko03000deepkoala

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