Gene detail

Detailed information of g883.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_169625867.1, PfkB family carbohydrate kinase [Pacificispira spongiicola]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5KYR3	5-dehydro-2-deoxygluconokinase OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=iolC PE=3 SV=1
A4IPB3	5-dehydro-2-deoxygluconokinase OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=iolC PE=3 SV=1
B6IVG3	Polyribonucleotide nucleotidyltransferase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=pnp PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001400 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001961 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002164 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003409 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004065 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004219 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004947 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005144 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006429 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007391 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007846 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0010326 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0011766 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00294 all species →	PfkB	pfkB family carbohydrate kinase	Domain	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF08755 all species →	YccV-like	Hemimethylated DNA-binding protein YccV like	Domain	Interproscan
PF08216 all species →	CTNNBL	Catenin-beta-like, Arm-motif containing nuclear	Repeat	Interproscan
PF03725 all species →	RNase_PH_C	3' exoribonuclease family, domain 2	Domain	Interproscan
PF01138 all species →	RNase_PH	3' exoribonuclease family, domain 1	Domain	Interproscan
PF00575 all species →	S1	S1 RNA binding domain	Domain	Interproscan
PF03726 all species →	PNPase	Polyribonucleotide nucleotidyltransferase, RNA binding domain	Domain	Interproscan
PF00013 all species →	KH_1	KH domain	Domain	Interproscan
PF00160 all species →	Pro_isomerase	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	Domain	Interproscan
PF11708 all species →	Slu7	Pre-mRNA splicing Prp18-interacting factor	Domain	Interproscan
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan
PF00171 all species →	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029056 all species →	Homologous_superfamily	Ribokinase-like	Interproscan
IPR011611 all species →	Domain	Carbohydrate kinase PfkB	Interproscan
IPR002139 all species →	Family	Ribokinase/fructokinase	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR050614 all species →	Family	Synaptic Scaffolding LAP/MAGUK Families	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR053189 all species →	Family	Chloroplast Clp protease adapter protein ClpF	Interproscan
IPR011722 all species →	Domain	Hemimethylated DNA-binding domain	Interproscan
IPR036623 all species →	Homologous_superfamily	Hemimethylated DNA-binding domain superfamily	Interproscan
IPR039678 all species →	Family	Beta-catenin-like protein 1	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR013180 all species →	Domain	Beta-catenin-like protein 1, N-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR015847 all species →	Domain	Exoribonuclease, phosphorolytic domain 2	Interproscan
IPR001247 all species →	Domain	Exoribonuclease, phosphorolytic domain 1	Interproscan
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR015848 all species →	Domain	Polyribonucleotide nucleotidyltransferase, RNA-binding domain	Interproscan
IPR036345 all species →	Homologous_superfamily	Exoribonuclease, PH domain 2 superfamily	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR036456 all species →	Homologous_superfamily	Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily	Interproscan
IPR012162 all species →	Family	Polyribonucleotide nucleotidyltransferase	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR027408 all species →	Homologous_superfamily	PNPase/RNase PH domain superfamily	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR029000 all species →	Homologous_superfamily	Cyclophilin-like domain superfamily	Interproscan
IPR044666 all species →	Family	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-like	Interproscan
IPR002130 all species →	Domain	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR039974 all species →	Family	Pre-mRNA-splicing factor SLU7	Interproscan
IPR021715 all species →	Domain	Pre-mRNA-splicing factor SLU7 domain	Interproscan
IPR050955 all species →	Family	Plant Biomass Hydrolyzing Esterase	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR036598 all species →	Homologous_superfamily	GOLD domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR009038 all species →	Domain	GOLD domain	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR015590 all species →	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR010061 all species →	Family	Methylmalonate-semialdehyde dehydrogenase	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR050653 all species →	Family	Protease Inhibitors and Growth Factor Antagonists	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10584 all species →	SUGAR KINASE	Interproscan
PTHR23119 all species →	DISCS LARGE	Interproscan
PTHR48351 all species →	YCCV-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR14978 all species →	BETA-CATENIN-LIKE PROTEIN 1 NUCLEAR ASSOCIATED PROTEIN	Interproscan
PTHR11252 all species →	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE	Interproscan
PTHR45625 all species →	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED	Interproscan
PTHR12942 all species →	STEP II SPLICING FACTOR SLU7	Interproscan
PTHR43037 all species →	UNNAMED PRODUCT-RELATED	Interproscan
PTHR46753 all species →	FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1	Interproscan
PTHR43866 all species →	MALONATE-SEMIALDEHYDE DEHYDROGENASE	Interproscan
PTHR10913 all species →	FOLLISTATIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0009790 all species →	Biological Process	embryo development	Interproscan
GO:0016323 all species →	Cellular Component	basolateral plasma membrane	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0043113 all species →	Biological Process	receptor clustering	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0097120 all species →	Biological Process	receptor localization to synapse	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0004654 all species →	Molecular Function	polyribonucleotide nucleotidyltransferase activity	Interproscan
GO:0006402 all species →	Biological Process	mRNA catabolic process	Interproscan
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0000413 all species →	Biological Process	protein peptidyl-prolyl isomerization	Interproscan
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0008380 all species →	Biological Process	RNA splicing	Interproscan
GO:0030628 all species →	Molecular Function	pre-mRNA 3'-splice site binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0005770 all species →	Cellular Component	late endosome	Interproscan
GO:0005776 all species →	Cellular Component	autophagosome	Interproscan
GO:0072383 all species →	Biological Process	plus-end-directed vesicle transport along microtubule	Interproscan
GO:1901098 all species →	Biological Process	positive regulation of autophagosome maturation	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0004491 all species →	Molecular Function	methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006210 all species →	Biological Process	thymine catabolic process	Interproscan
GO:0006574 all species →	Biological Process	valine catabolic process	Interproscan
GO:0018478 all species →	Molecular Function	malonate-semialdehyde dehydrogenase (acetylating) activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00962	pnp, PNPT1; polyribonucleotide nucleotidyltransferase	EC:2.7.7.8	Transfer RNA biogenesis	ko03016	deepkoala
K12734	PPIL3; peptidyl-prolyl cis-trans isomerase-like 3	EC:5.2.1.8	Chaperones and folding catalysts	ko03110	deepkoala
K12796	ERBIN, ERBB2IP; erbb2-interacting protein	-	NOD-like receptor signaling pathway	ko04621	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.