Gene detail

Detailed information of g8834.t2 in Acropora digitifera

Genomic Location: chr4Alt:13617832...13636488
NR annotation: XP_029188225.2, uncharacterized protein LOC114955525 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8834.t2

ATGTTTAGTGCTAATAATTCGGCTGGCTATGAGGAAGAAGTTGATCTGGGGGATTGTACAAGGAAACGAATTACAAGGGCAATGAAACCTCTTTTGTTTGAAATTCCGCACTTTCTGACCAATGAAGAATGTGACTACATCATTTGGCGAGCCGAAGAAAAAGGTTTAATATCGAGCATAGCACGTGGAGGACTGACGAAAAGAGAAGACTTGGAAATACCAGAAGTAGAGAGTGGAAAAGGAGAGGGTGCTGCCGGGATATTTGAAGCCTGGGATGTGAACCACGATGGAGAGATTACAGTGCAAGAGGTAATAGACTTCGCTAAGAGATACATGTATGTGGTGTTCAGTGAAGAGGATCTTATGGATTTACTCCATAAAGTGAATGTTACAGAATTAGATGATGGATCTATCACGTTTGACGAGTTTCAAACCATGAACACTCGTGGAGCAGATACCGTGATGTATCATGCTAGCAAAACTCATCCAAAGTACAGACCTCGATACAGCGATCAGACGTGGATAAACCAACGAGGTCTCAGGGATCCTGTGTTAGATAAAGTCCTAGAAAGAGTTATCAAGTTAACCAAACTTCCAAGAGAGATCGTATATGGAAGCGAACGACTTCAGGTTGTTTATTATGACAAGAATGGCCACTACAATGCGCATTTTGATTCTGAAACTCACAAGATGAGTCACATTCCTTGTTGTCATCAAATGGAAGAAAAAAAGATGCTGAATTTCGAGGTTGCCTGTAGGCTTTGCAGGTACATCACAATACTTTATTATTTGAACGATGTGGAAGAAGGAGGCGAAACAGCTTTTCCAGTCGCAGATAACAAAACATTAGACATGGAGCGCGGTTTAAATAGACAAACTTCACGTGCTTATTTTGTCTTTGAAACATCAACAATGATTTTGTTTAGTCTGTTAATAATTTTCTACCTTCCAAACCTTCATTTGAGCGCTCATTGCACGAACGTCCAACAGAACCCGAGCACAAACCACTACAACGAATGTCGATTTACAAAAAAGGGCGAAAATTGCGATTACAAAAAGTTCGATTCGCATGGAGATGGACCTTGTATGGTCGGGAGAAAGGCTGGACTTACAAGAATAGATGGACTAAAGGTCGGACATGTAGAGAGTGTGGACCTTGGAGACATAACAAGGAAACGTATAACACGAGCCATGAAGCCTCCTATATTTGAAATTCCAAACTTTCTCAGTGACGCAGAGTGTGATCACATTATCAGCTTGGCGAAAGGGAAAGGCCTCATCTCCAGTATTGCTCGAGGAGGACTCCAATCAAATGAAGAATTTAGGATTCCTAACATTAGATATGGTAAAGCAGAAAGTACGGCAGGATATTTTGAAGGCTTCGATTACGACAAGAATGAGATAGTGACTCTAAAAGAGGTGATGGCGTTTGCAAAAATGTACCACTATCTTGTTCTTACTGAGGAGGATGCATTGCAATTACTCCATGAAGCGAACATAACTGAATTAGATGATGGATTTGCTACTCGTGATGAATTTGACAACATGAATACCCTTGGGTTAAGCGACGCGATGTTCGCCACAGTCTTGTCCCACCCAATGCACAAATCGAGATTTAGTGAACAGACATGGGTGAATCAGAGAGGCCTGGGAGATCCACTTTTAGAAAAAATAGTGCAAAGGGTTGTGGAACTGACAAGACTTCCTAGAGAAATAATCTATGGAAGCGAGCATTTACAGGTTGTCTACTATGGGAGAAATGGACATTACCATGCCCACTTTGACTCTGAAACTCACGAAAGAACAGACGTAGTATGTTGTCATCTGCATGAAGATATGAAACAAGCTTTCCACAAAGGGCAGGGATGTAGGCTCTGTAGATACATCACTATACTATATTATCTAAACGATGTCGAGCAAGGAGGGGAGACAGCATTTCCGATGGCAGACAACGTTACTCTTGACATGGATCAATTGGCTACAAGTCGCGGCGAGCTTGATTATTATAATCTCAGTCACAACTGCCACAAGGGAAACCTCGTTCTCAGTCCCCGGAAGGGAACAGCTATCATGTGGTACAATCATCTATTGGATGAAGAGAGTGGCTGGATGGGGCCCAGGGACGAATATAGTTTGCATGGTGGATGTGACATACGGAAAGGAGAAAAATGGATCGCGAACAACTGGATCACTGCACCGTACAAGGACAGTGCGCATGTGCCAAGCTACTGGCTTCAAAAGTTTGATATTATATAG

Transcript

chr4Alt.g8834.t2

TTGTGTTCTTGTCATCTTGTGTTCACATGTTTAGTGCTAATAATTCGGCTGGCTATGAGGAAGAAGTTGATCTGGGGGATTGTACAAGGAAACGAATTACAAGGGCAATGAAACCTCTTTTGTTTGAAATTCCGCACTTTCTGACCAATGAAGAATGTGACTACATCATTTGGCGAGCCGAAGAAAAAGGTTTAATATCGAGCATAGCACGTGGAGGACTGACGAAAAGAGAAGACTTGGAAATACCAGAAGTAGAGAGTGGAAAAGGAGAGGGTGCTGCCGGGATATTTGAAGCCTGGGATGTGAACCACGATGGAGAGATTACAGTGCAAGAGGTAATAGACTTCGCTAAGAGATACATGTATGTGGTGTTCAGTGAAGAGGATCTTATGGATTTACTCCATAAAGTGAATGTTACAGAATTAGATGATGGATCTATCACGTTTGACGAGTTTCAAACCATGAACACTCGTGGAGCAGATACCGTGATGTATCATGCTAGCAAAACTCATCCAAAGTACAGACCTCGATACAGCGATCAGACGTGGATAAACCAACGAGGTCTCAGGGATCCTGTGTTAGATAAAGTCCTAGAAAGAGTTATCAAGTTAACCAAACTTCCAAGAGAGATCGTATATGGAAGCGAACGACTTCAGGTTGTTTATTATGACAAGAATGGCCACTACAATGCGCATTTTGATTCTGAAACTCACAAGATGAGTCACATTCCTTGTTGTCATCAAATGGAAGAAAAAAAGATGCTGAATTTCGAGGTTGCCTGTAGGCTTTGCAGGTACATCACAATACTTTATTATTTGAACGATGTGGAAGAAGGAGGCGAAACAGCTTTTCCAGTCGCAGATAACAAAACATTAGACATGGAGCGCGGTTTAAATAGACAAACTTCACGTGCTTATTTTGTCTTTGAAACATCAACAATGATTTTGTTTAGTCTGTTAATAATTTTCTACCTTCCAAACCTTCATTTGAGCGCTCATTGCACGAACGTCCAACAGAACCCGAGCACAAACCACTACAACGAATGTCGATTTACAAAAAAGGGCGAAAATTGCGATTACAAAAAGTTCGATTCGCATGGAGATGGACCTTGTATGGTCGGGAGAAAGGCTGGACTTACAAGAATAGATGGACTAAAGGTCGGACATGTAGAGAGTGTGGACCTTGGAGACATAACAAGGAAACGTATAACACGAGCCATGAAGCCTCCTATATTTGAAATTCCAAACTTTCTCAGTGACGCAGAGTGTGATCACATTATCAGCTTGGCGAAAGGGAAAGGCCTCATCTCCAGTATTGCTCGAGGAGGACTCCAATCAAATGAAGAATTTAGGATTCCTAACATTAGATATGGTAAAGCAGAAAGTACGGCAGGATATTTTGAAGGCTTCGATTACGACAAGAATGAGATAGTGACTCTAAAAGAGGTGATGGCGTTTGCAAAAATGTACCACTATCTTGTTCTTACTGAGGAGGATGCATTGCAATTACTCCATGAAGCGAACATAACTGAATTAGATGATGGATTTGCTACTCGTGATGAATTTGACAACATGAATACCCTTGGGTTAAGCGACGCGATGTTCGCCACAGTCTTGTCCCACCCAATGCACAAATCGAGATTTAGTGAACAGACATGGGTGAATCAGAGAGGCCTGGGAGATCCACTTTTAGAAAAAATAGTGCAAAGGGTTGTGGAACTGACAAGACTTCCTAGAGAAATAATCTATGGAAGCGAGCATTTACAGGTTGTCTACTATGGGAGAAATGGACATTACCATGCCCACTTTGACTCTGAAACTCACGAAAGAACAGACGTAGTATGTTGTCATCTGCATGAAGATATGAAACAAGCTTTCCACAAAGGGCAGGGATGTAGGCTCTGTAGATACATCACTATACTATATTATCTAAACGATGTCGAGCAAGGAGGGGAGACAGCATTTCCGATGGCAGACAACGTTACTCTTGACATGGATCAATTGGCTACAAGTCGCGGCGAGCTTGATTATTATAATCTCAGTCACAACTGCCACAAGGGAAACCTCGTTCTCAGTCCCCGGAAGGGAACAGCTATCATGTGGTACAATCATCTATTGGATGAAGAGAGTGGCTGGATGGGGCCCAGGGACGAATATAGTTTGCATGGTGGATGTGACATACGGAAAGGAGAAAAATGGATCGCGAACAACTGGATCACTGCACCGTACAAGGACAGTGCGCATGTGCCAAGCTACTGGCTTCAAAAGTTTGATATTATATAGCACTAGGTACCCTAGTTAACTTTAGGTTAGAAAGCGTTGCTATTTATTAATTAAAGGTCTGATGATGCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NXG6	Transmembrane prolyl 4-hydroxylase OS=Homo sapiens OX=9606 GN=P4HTM PE=1 SV=2
Q8BG58	Transmembrane prolyl 4-hydroxylase OS=Mus musculus OX=10090 GN=P4htm PE=1 SV=1
Q9LN20	Probable prolyl 4-hydroxylase 3 OS=Arabidopsis thaliana OX=3702 GN=P4H3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13640 all species →	2OG-FeII_Oxy_3	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045054 all species →	Family	Prolyl 4-hydroxylase	Interproscan
IPR044862 all species →	Domain	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR006620 all species →	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR005123 all species →	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10869 all species →	PROLYL 4-HYDROXYLASE ALPHA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004656 all species →	Molecular Function	procollagen-proline 4-dioxygenase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0018401 all species →	Biological Process	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0031418 all species →	Molecular Function	L-ascorbic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g8834.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.