Gene detail

Detailed information of g884.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MBU3916862.1, valine--tRNA ligase [bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q3AF87	Valine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) OX=246194 GN=valS PE=3 SV=1
Q3A253	Valine--tRNA ligase OS=Syntrophotalea carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=valS PE=3 SV=1
Q8RBN5	Valine--tRNA ligase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=valS PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|VHS

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00459	Inositol_P	Inositol monophosphatase family	Family	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00790	VHS	VHS domain	Repeat	Interproscan
PF08264	Anticodon_1	Anticodon-binding domain of tRNA ligase	Domain	Interproscan
PF10458	Val_tRNA-synt_C	Valyl tRNA synthetase tRNA binding arm	Domain	Interproscan
PF00133	tRNA-synt_1	tRNA synthetases class I (I, L, M and V)	Domain	Interproscan
PF15769	DUF4698	Domain of unknown function (DUF4698)	Family	Interproscan
PF01576	Myosin_tail_1	Myosin tail	Coiled-coil	Interproscan
PF16198	TruB_C_2	tRNA pseudouridylate synthase B C-terminal domain	Family	Interproscan
PF01509	TruB_N	TruB family pseudouridylate synthase (N terminal domain)	Family	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000760	Family	Inositol monophosphatase-like	Interproscan
IPR050725	Family	CysQ/Inositol Monophosphatase	Interproscan
IPR020550	Conserved_site	Inositol monophosphatase, conserved site	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR008942	Homologous_superfamily	ENTH/VHS	Interproscan
IPR002014	Domain	VHS domain	Interproscan
IPR033705	Domain	Valyl tRNA synthetase, anticodon-binding domain	Interproscan
IPR002303	Family	Valine-tRNA ligase	Interproscan
IPR009008	Homologous_superfamily	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	Interproscan
IPR037118	Homologous_superfamily	Valyl-tRNA synthetase, tRNA-binding arm superfamily	Interproscan
IPR010978	Homologous_superfamily	Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR013155	Domain	Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding	Interproscan
IPR019499	Domain	Valyl-tRNA synthetase, tRNA-binding arm	Interproscan
IPR009080	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR002300	Domain	Aminoacyl-tRNA synthetase, class Ia	Interproscan
IPR031526	Family	Protein of unknown function DUF4698	Interproscan
IPR002928	Domain	Myosin tail	Interproscan
IPR014780	Family	tRNA pseudouridine synthase II, TruB	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR032819	Domain	tRNA pseudouridylate synthase B, C-terminal	Interproscan
IPR002501	Domain	Pseudouridine synthase II, N-terminal	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43028	3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1	Interproscan
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan
PTHR13856	VHS DOMAIN CONTAINING PROTEIN FAMILY	Interproscan
PTHR11946	VALYL-TRNA SYNTHETASES	Interproscan
PTHR34754	COILED-COIL DOMAIN-CONTAINING PROTEIN 60	Interproscan
PTHR45615	MYOSIN HEAVY CHAIN, NON-MUSCLE	Interproscan
PTHR13767	TRNA-PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008254	Molecular Function	3'-nucleotidase activity	Interproscan
GO:0012505	Cellular Component	endomembrane system	Interproscan
GO:0046854	Biological Process	phosphatidylinositol phosphate biosynthetic process	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0005768	Cellular Component	endosome	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030276	Molecular Function	clathrin binding	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004832	Molecular Function	valine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006438	Biological Process	valyl-tRNA aminoacylation	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0002161	Molecular Function	aminoacyl-tRNA editing activity	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016459	Cellular Component	myosin complex	Interproscan
GO:0000146	Molecular Function	microfilament motor activity	Interproscan
GO:0016460	Cellular Component	myosin II complex	Interproscan
GO:0032982	Cellular Component	myosin filament	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006400	Biological Process	tRNA modification	Interproscan
GO:1990481	Biological Process	mRNA pseudouridine synthesis	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15759	IMPAD1, IMPA3; Golgi-resident PAP phosphatase	EC:3.1.3.7	Transfer RNA biogenesis	ko03016	deepkoala
			Transfer RNA biogenesis	ko03016	deepkoala
			Ubiquitin system	ko04121	deepkoala
			Transporters	ko02000	deepkoala
			Antigen processing and presentation	ko04612	deepkoala
			Phosphatidylinositol signaling system	ko04070	deepkoala