Gene detail

Detailed information of g8879.t1 in Montipora capitata

Genomic Location: Sc0000224:111312...113369
NR annotation: XP_044177433.1, uncharacterized protein LOC122959876 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8879.t1

atgacctcactgcacatctgcagtgagcgcatcgacgctgaagacattttgctaactctagcgactgaaacatgcgacgttgatgcgcggaacaaactgggaagaactgcacttcatctggcagccaaacacggaaacactgagaacttgaaaagactcctcgatgctggctgcaacagaactattaaagacaaacttgggttcaccgcagttgggttagctttcaagtttaaccacaaaggaagcgcagagattttactgcattataaaccaaagaaaaagagatggtcctccagagagagctgtttggatggaaacgaaagtgagccagttaaacgaggaaatcaagaaaaattgctgtcaaaagcacagagttttcctggtgttaacacttcatgcaagaaggcatcttcaatgctgaaaaagaaaaatcgcagcgaggtaatcttgaaacttttggaaagagcgtctagagggaaagcatcgaattttcgaactcaccatctaatactcgccatgcttaacgtcaagagaaacaggttagacggcatgatcatttcgaagcgaacgaatttcctcgagtctgtatttgagagagaagtgttgtcttcgtttcttgactcttcttcgcttacgtcatctagcttggttcttttccgctgtgttgtatctttggatggcagattaacacagctgtgcctttgtaactttgcaaaatccgttttcaagaagcgagattcgaacaccttggcgttggactttttgtcgaagctgctacgaaatttgaaaagctccattctacattacggttcccggcgtctcacgctaaattctatcccatatcagtgtcagagatcctcttgggtttttatcattcccaaacttacaagaaaggaaaacaaacctgatgacttcagagatttcgcgcaaatgttgacagacgttttcgggtgtctgagtgatagaggaatttcacaaaaaattaccgactacgattttgaaacaaaaattgaactcgatcaagaccagtccgtcttagattctttggagaaaaattacacgttagaccacagtagtcaaaaatgcaagtttgttgcttcatatgtgtacaaactggaagactgtctcaggattttagaactcatgatcaatatgagtagtacccctgcaccatttgctggcgatttactagaattttgtttggagaatccagttgtcttcatccgttgtcttacgtaccgagattccatattctgtgcgatgctaaacaaatctcttacagaggacaacaactggacggcggacaaatttgcaaggcttttcctacaagtctgcgttggcttatcgtctgaccaccggctgttgtataaatgcgcaagcgcggttatgaagcaaggcattgcgcattgtgattcggcatcccttggaacttgtattttagtgcgtatggggcttctaaaaggggaatacgacataagttcggtagtggatctcaaaggaccccttttcgccctagagcacgtatttgcagctgactatttcccgagaaaccttgccgcaatctttgcgtcttttctttgcaaatcaagccccaaactatttggattggaccagttgcgccttcgagctcttaagtctgcggttagcaaagaagtccttcctacctcatgccaggaagctgaaagtgacgctggaaggagcttcaaacggatatgtgatgtcatggcactcgaagaagattgggaacttcttttcgaatgcgctgatgaactgttctcgaacatttttgaaacactcaattgcaacgtgatgcgtgtaagtgaaagtctcctgatttatcttgggttattgaagagtgaatcgtgcatagaaattgtccggagtttcaagtgtgccgtaaaccttcttaaccatatggccaagcaaagttacttttcatccgaatcaagagccgtgtttttatgcttttttcaaaagtccaattcttctctgtacgcatgctccgcggaggttgacgctcttctaagaacaatacgaaacatcaaagctggtctgtaa

Transcript

g8879.t1

ATGACCTCACTGCACATCTGCAGTGAGCGCATCGACGCTGAAGACATTTTGCTAACTCTAGCGACTGAAACATGCGACGTTGATGCGCGGAACAAACTGGGAAGAACTGCACTTCATCTGGCAGCCAAACACGGAAACACTGAGAACTTGAAAAGACTCCTCGATGCTGGCTGCAACAGAACTATTAAAGACAAACTTGGGTTCACCGCAGTTGGGTTAGCTTTCAAGTTTAACCACAAAGGAAGCGCAGAGATTTTACTGCATtataaaccaaagaaaaagagatGGTCCTCCAGAGAGAGCTGTTTGGATGGAAACGAAAGTGAGCCAGTTAAACGAGGAAATCAAGAAAAATTGCTGTCAAAAGCACAGAGTTTTCCTGGTGTTAACACTTCATGCAAGAAGGCATCTTCAatgctgaaaaagaaaaatcgcAGCGAGGTAATCTTGAAACTTTTGGAAAGAGCGTCTAGAGGGAAAGCATCGAATTTTCGAACTCACCATCTAATACTCGCCATGCTTAACGTCAAGAGAAACAGGTTAGACGGCATGATCATTTCGAAGCGAACGAATTTCCTCGAGTCTGTATTTGAGAGAGAAGTGTTGTCTTCGTTTCTTGACTCTTCTTCGCTTACGTCATCTAGCTTGGTTCTTTTCCGCTGTGTTGTATCTTTGGATGGCAGATTAACACAGCTGTGCCTTTGTAACTttgcaaaatccgttttcaagAAGCGAGATTCGAACACCTTGGCGTTGGACTTTTTGTCGAAGCTGCTACGAAATTTGAAAAGCTCCATTCTACATTACGGTTCCCGGCGTCTCACGCTAAATTCTATCCCATATCAGTGTCAGAGATCCTCTTGGGTTTTTATCATTCCCAAACTtacaagaaaggaaaacaaacctGATGACTTCAGAGATTTCGCGCAAATGTTGACAGACGTTTTCGGGTGTCTGAGTGATAGAGgaatttcacaaaaaattaccgactacgattttgaaacaaaaattgaacTCGATCAAGACCAGTCCGTCTTAGATTCTTTGGAGAAAAATTACACGTTAGACCACAGTAGTCAAAAATGCAAGTTTGTTGCTTCATATGTGTACAAACTGGAAGACTGTCTCAGGATTTTAGAACTCATGATCAATATGAGTAGTACCCCTGCACCATTTGCTGGCGATTTACTAGAATTTTGTTTGGAGAATCCAGTTGTCTTCATCCGTTGTCTTACGTACCGAGATTCCATATTCTGTGCGATGCTAAACAAATCTCTTACAGAGGACAACAACTGGACGGCGGACAAATTTGCAAGGCTTTTCCTACAAGTCTGCGTTGGCTTATCGTCTGACCACCGGCTGTTGTATAAATGCGCAAGCGCGGTTATGAAGCAAGGCATTGCGCATTGTGATTCGGCATCCCTTGGAACTTGTATTTTAGTGCGTATGGGGCTTCTAAAAGGGGAATACGACATAAGTTCGGTAGTGGATCTCAAAGGACCCCTTTTCGCCCTAGAGCACGTATTTGCAGCTGACTATTTCCCGAGAAACCTTGCCGCAATCTTTGCGTCTTTTCTTTGCAAATCAAGCCCCAAACTATTTGGATTGGACCAGTTGCGCCTTCGAGCTCTTAAGTCTGCGGTTAGCAAAGAAGTCCTTCCTACCTCATGCCAGGAAGCTGAAAGTGACGCTGGAAGGAGCTTCAAACGGATATGTGATGTCATGGCACTCGAAGAAGATTGGGAACTTCTTTTCGAATGCGCTGATGAACTGTTCTCGAACATTTTTGAAACACTCAATTGCAACGTGATGCGTGTAAGTGAAAGTCTCCTGATTTATCTTGGGTTATTGAAGAGTGAATCGTGCATAGAAATTGTCCGGAGTTTCAAGTGTGCCGTAAACCTTCTTAACCATATGGCCAAGCAAAGTTACTTTTCATCCGAATCAAGAGCCGTGTTTTTATGCTTTTTTCAAAAGTCCAATTCTTCTCTGTACGCATGCTCCGCGGAGGTTGACGCTCTTCTAAGAACAATACGAAACATCAAAGCTGGTCTGTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009525 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF07834 all species →	RanGAP1_C	RanGAP1 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036720 all species →	Homologous_superfamily	Ran-GTPase activating protein 1, C-terminal domain superfamily	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR009109 all species →	Domain	Ran-GTPase activating protein 1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24203 all species →	ANKYRIN REPEAT FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g8879.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.