Detailed information of g888.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047142061.1, hyaluronan mediated motility receptor isoform X5 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q5RJT2pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 OS=Rattus norvegicus OX=10116 GN=Ftsj3 PE=1 SV=1
Q9DBE9pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 OS=Mus musculus OX=10090 GN=Ftsj3 PE=1 SV=1
Q5ZKM1pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 OS=Gallus gallus OX=9031 GN=FTSJ3 PE=2 SV=2
Gene familySubfamily
Transcription Factors Familyzf-C2H2
Ubiquitin FamilyULD|UBL|NEDD8
Ubiquitin FamilyULD|UFD/UBQ|UBQ_Other

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF02140Gal_LectinGalactose binding lectin domainDomainInterproscan
PF01137RTCRNA 3'-terminal phosphate cyclaseDomainInterproscan
PF16041APD1-4_ME3 ubiquitin-protein ligase APD1-4, middle domainDomainInterproscan
PF00622SPRYSPRY domainFamilyInterproscan
PF00415RCC1Regulator of chromosome condensation (RCC1) repeatRepeatInterproscan
PF01728FtsJFtsJ-like methyltransferaseFamilyInterproscan
PF11861DUF3381Ribosomal RNA methyltransferase Spb1, DUF3381DomainInterproscan
PF07780Spb1_CSpb1 C-terminal domainDomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF13415Kelch_3Galactose oxidase, central domainRepeatInterproscan
PF01805SurpSurp moduleFamilyInterproscan
PF12230PRP21_like_PPre-mRNA splicing factor PRP21 like proteinFamilyInterproscan
PF00240ubiquitinUbiquitin familyDomainInterproscan
PF00111Fer22Fe-2S iron-sulfur cluster binding domainDomainInterproscan
PF00685Sulfotransfer_1Sulfotransferase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052065FamilyComplement and asymmetry regulatorInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR043159Homologous_superfamilyD-galactoside/L-rhamnose binding SUEL lectin domain superfamilyInterproscan
IPR000922DomainD-galactoside/L-rhamnose binding SUEL lectin domainInterproscan
IPR037136Homologous_superfamilyRNA 3'-terminal phosphate cyclase domain superfamilyInterproscan
IPR023797DomainRNA 3'-terminal phosphate cyclase domainInterproscan
IPR020719Conserved_siteRNA 3'-terminal phosphate cyclase-like, conserved siteInterproscan
IPR000228FamilyRNA 3'-terminal phosphate cyclaseInterproscan
IPR013792Homologous_superfamilyRNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaInterproscan
IPR032010DomainE3 ubiquitin-protein ligase APD1-4, middle domainInterproscan
IPR009091Homologous_superfamilyRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIInterproscan
IPR000408RepeatRegulator of chromosome condensation, RCC1Interproscan
IPR051625FamilyDiverse Signaling and Regulatory Domain-Containing ProteinInterproscan
IPR003877DomainSPRY domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR043136Homologous_superfamilyB30.2/SPRY domain superfamilyInterproscan
IPR001870DomainB30.2/SPRY domainInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR002877DomainRibosomal RNA methyltransferase, FtsJ domainInterproscan
IPR024576DomainRibosomal RNA methyltransferase Spb1, domain of unknown function DUF3381Interproscan
IPR050082FamilyRibosomal RNA large subunit methyltransferase RlmEInterproscan
IPR012920DomainRibosomal RNA methyltransferase, SPB1-like, C-terminalInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR015915Homologous_superfamilyKelch-type beta propellerInterproscan
IPR051568FamilyLZTR1/AttractinInterproscan
IPR035563DomainSplicing factor 3A subunit 1, ubiquitin domainInterproscan
IPR000061DomainSWAP/SurpInterproscan
IPR035967Homologous_superfamilySWAP/Surp superfamilyInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR000626DomainUbiquitin-like domainInterproscan
IPR022030DomainSplicing factor 3A subunit 1, conserved domainInterproscan
IPR045146FamilySplicing factor 3A subunit 1Interproscan
IPR036010Homologous_superfamily2Fe-2S ferredoxin-like superfamilyInterproscan
IPR001055FamilyAdrenodoxin-likeInterproscan
IPR001041Domain2Fe-2S ferredoxin-type iron-sulfur binding domainInterproscan
IPR012675Homologous_superfamilyBeta-grasp domain superfamilyInterproscan
IPR018298Binding_siteAdrenodoxin, iron-sulphur binding siteInterproscan
IPR051135FamilyGal/GlcNAc/GalNAc SulfotransferaseInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000863DomainSulfotransferase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22906PROPERDINInterproscan
PTHR11096RNA 3' TERMINAL PHOSPHATE CYCLASEInterproscan
PTHR39077DUF4793 DOMAIN-CONTAINING PROTEINInterproscan
PTHR22872BTK-BINDING PROTEIN-RELATEDInterproscan
PTHR10920RIBOSOMAL RNA METHYLTRANSFERASEInterproscan
PTHR47018CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR23235KRUEPPEL-LIKE TRANSCRIPTION FACTORInterproscan
PTHR32083CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATEDInterproscan
PTHR46376LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1Interproscan
PTHR15316SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATEDInterproscan
PTHR23426FERREDOXIN/ADRENODOXINInterproscan
PTHR10704CARBOHYDRATE SULFOTRANSFERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0030246Molecular Functioncarbohydrate bindingInterproscan
GO:0003963Molecular FunctionRNA-3'-phosphate cyclase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0032259Biological ProcessmethylationInterproscan
GO:0000463Biological Processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000466Biological Processmaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0001510Biological ProcessRNA methylationInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0008173Molecular FunctionRNA methyltransferase activityInterproscan
GO:0008650Molecular FunctionrRNA (uridine-2'-O-)-methyltransferase activityInterproscan
GO:0016435Molecular FunctionrRNA (guanine) methyltransferase activityInterproscan
GO:0030687Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0031167Biological ProcessrRNA methylationInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0005856Cellular ComponentcytoskeletonInterproscan
GO:0005794Cellular ComponentGolgi apparatusInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0000381Biological Processregulation of alternative mRNA splicing, via spliceosomeInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0045292Biological ProcessmRNA cis splicing, via spliceosomeInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0051536Molecular Functioniron-sulfur cluster bindingInterproscan
GO:0051537Molecular Function2 iron, 2 sulfur cluster bindingInterproscan
GO:0140647Biological ProcessP450-containing electron transport chainInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0051353Biological Processpositive regulation of oxidoreductase activityInterproscan
GO:0001517Molecular FunctionN-acetylglucosamine 6-O-sulfotransferase activityInterproscan
GO:0006044Biological ProcessN-acetylglucosamine metabolic processInterproscan
GO:0006790Biological Processsulfur compound metabolic processInterproscan
GO:0008146Molecular Functionsulfotransferase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09210KLF15; krueppel-like factor 15-Mitochondrial biogenesisko03029deepkoala
Spliceosomeko03041deepkoala
Transcription factorsko03000deepkoala

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