Gene detail

Detailed information of g891.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_022098249.1, high-affinity choline transporter 1-like [Acanthaster planci]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q9VE46	High-affinity choline transporter 1 OS=Drosophila melanogaster OX=7227 GN=ChT PE=2 SV=2
Q9GZV3	High affinity choline transporter 1 OS=Homo sapiens OX=9606 GN=SLC5A7 PE=1 SV=1
O02228	High-affinity choline transporter 1 OS=Caenorhabditis elegans OX=6239 GN=cho-1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13868	TPH	Trichohyalin-plectin-homology domain	Coiled-coil	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00766	ETF_alpha	Electron transfer flavoprotein FAD-binding domain	Domain	Interproscan
PF01012	ETF	Electron transfer flavoprotein domain	Domain	Interproscan
PF00474	SSF	Sodium:solute symporter family	Family	Interproscan
PF01585	G-patch	G-patch domain	Family	Interproscan
PF00481	PP2C	Protein phosphatase 2C	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043597	Domain	Trichohyalin-plectin-homology domain	Interproscan
IPR043596	Family	CFAP53/TCHP	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR014731	Domain	Electron transfer flavoprotein, alpha subunit, C-terminal	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR014730	Domain	Electron transfer flavoprotein, alpha/beta-subunit, N-terminal	Interproscan
IPR001308	Family	Electron transfer flavoprotein alpha subunit/FixB	Interproscan
IPR018206	Conserved_site	Electron transfer flavoprotein subunit alpha, conserved site	Interproscan
IPR029035	Homologous_superfamily	DHS-like NAD/FAD-binding domain superfamily	Interproscan
IPR052244	Family	High-affinity choline transporter	Interproscan
IPR038377	Homologous_superfamily	Sodium/glucose symporter superfamily	Interproscan
IPR001734	Family	Sodium/solute symporter	Interproscan
IPR000467	Domain	G-patch domain	Interproscan
IPR050656	Family	PIN2/TERF1-interacting telomerase inhibitor	Interproscan
IPR015655	Family	Protein phosphatase 2C	Interproscan
IPR001932	Domain	PPM-type phosphatase-like domain	Interproscan
IPR036457	Homologous_superfamily	PPM-type phosphatase-like domain superfamily	Interproscan
IPR000222	Binding_site	PPM-type phosphatase, divalent cation binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31183	TRICHOPLEIN KERATIN FILAMENT-BINDING PROTEIN FAMILY MEMBER	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR43153	ELECTRON TRANSFER FLAVOPROTEIN ALPHA	Interproscan
PTHR45897	HIGH-AFFINITY CHOLINE TRANSPORTER 1	Interproscan
PTHR23149	G PATCH DOMAIN CONTAINING PROTEIN	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR13832	PROTEIN PHOSPHATASE 2C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0009055	Molecular Function	electron transfer activity	Interproscan
GO:0033539	Biological Process	fatty acid beta-oxidation using acyl-CoA dehydrogenase	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0005307	Molecular Function	choline:sodium symporter activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008292	Biological Process	acetylcholine biosynthetic process	Interproscan
GO:0015871	Biological Process	choline transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0004722	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0043169	Molecular Function	cation binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03522	fixB, etfA; electron transfer flavoprotein alpha subunit	-	Transporters	ko02000	deepkoala
			Protein phosphatases and associated proteins	ko01009	deepkoala
			Exosome	ko04147	deepkoala