Gene detail

Detailed information of g8942.t1 in Acropora digitifera

Genomic Location: chr4Alt:14698555...14714931
NR annotation: CAH3130208.1, unnamed protein product, partial [Porites lobata]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8942.t1

ATGAGCTTTTGCCGACTGTCGCTTTGGATTCTGATGGTGTCCAGTGTGCCAAGTTTAGCAGCAGCCGAGCAACCGCGCGATAACGATGAAGCGGAAGAGAACTCCAGTCCCAGAAGAATGCCGGATTTCTTGTTGTTTGGCGACATGAAATTAACAGACCACCAAAAAGTTTTGCTAAACATTTTTAGGAAACCACGTCATGGTTCGTCTTCTCTAAAACCTCCGGCTGCTACAAGAGAGAAAACGTTACTGTGGGAGAATGGAATCATTCCTTACGTGTTTGACTGCAGCTTACAGAATATGCCTGAACTTCAAAGGATTATTAGAGCAGCGATGGATGATTGGGAATCTAAGACTTGCATCAAGTTTGTGCCAAGAAAGGACGAGGAAAAAGAGAACGATTATGTCACGTTTTTCAGAGGATCTCATTGTTACAGTACAGTGGGCAAGGCCCGCAGCGCACGCCGGGAAGTATCTGTTGGATATGGATGCGAGTTTCATCATGTGATGCTCCATGAACTGGGTCACGTGATTGGATTTTGGCATGAGCAGAGCAGACCTGACAGAGATGATCATGTCAGAATTGTATGGAAGAATATCCTCAGAGGTTGGAAGCACGCTTTTGTGAAACAAACATGGCAAGCAGTGGATTCTATGAATGTAACATACGATTATTCCAGCATCATGCATTACAAATTCAACGCCTTTTCGCGCTCGCGTAATAGGAAAACCATACTGCCCCTGATAAGAGTACGGGCTCGCCCTTACAGAAGGATATCTAGATTGGATGCGCTTCAAGCCAATATGATGTACAAGTGCCATGCAATAAATCAGCAGCAGAAATCCTTGAACGAATCGACCAATAAAATACCAAAAAGAAAAAGGAGAGCAATCATTGGAAACCTGGTCAATATAAGAGGTCAAGTTCCAGAGTTAAAAAAGCAAGTCGATCCAAACTGCCGTGACACGAGGAGAGCCTGTGCTTTTTGGGCGCAAAGAGGTTTCTGTGAATCACGCCGTGACTTTATGCTTAAGGACTGTCAAATAAGCTGCAACTCTTGTGCTACAGTAAACAAAGCAAAGGAAGACAAACCAGATTCAGAGTGTGTCGATGTCAGGACCAACTGCCCAACTTTGGAAAAACGCGGCTATTGTCAAAAACGACCCGCCTACATGAACGTAAAGTGCAAGAAAAGCTGTAGATTTTGCGGTGAAGAAAAATGCATAGATCGAGATCCGAGATGTCGCGCATGGGCAAGATGGAAATTCTGCACAAGTGAACGTTACAAACACGTGATGTTACAGGCGTGTAGGAGGAGCTGTGCATTCTGCGTGGCAAAAACGCATGATTGCAAGGACAAGGTACCGTCTCGATGCCCAAGGCTAAAAGAAGAAGGATACTGCAAATCAGTCAAACCTGACGTTCGGCTTAACATGAGAAATATGTGTGCATTGACTTGTGGATTTTGCATAAAGACCATGGAAAGCGCCGTGGGGAATCAGAAACCTTCCATTAAATCTCCCTGTGTAGACACATTCAAAGGGTGTTATGGATGGTCGAGGCTTGGGTACTGTTTTTCCGATTGGAGAGGTCGCTTTATGAGAGACTACTGCAAACGAAGCTGCAACTTTTGCGCTTCTATTGATCCAGAATACACAGGTGAGAAGTGTTTGGACAATGAAATTACTTGTGAGTCTATGAAACAGACAGGGTATTGCGAATCAAAAGAATATAGAAGTTACATGGAATTTAACTGCAAGAGAACCTGTGGCTTTTGCCGAAGAAAGATAGCGGCAATGCCTACAACATGCGTCGACAAACACAGGCTTTGTAAATACTGGGCCGCGCAAGGGAATTGCTATATTATGTCTCGTTACATGATATCAAACTGTCCATTGGCCTGTAATATCTGTCATAAGGGAGTTTACGACAAACGTGTTAATCCTCGCTATGAAAGTAAGGCTTGCTTTGATAAACACACCAAGTGCTCCGAATGGACCGATATTGGTTACTGTGATATCTATTCCAACTTTATGTACAAGAAGTGCCCTCTAAGCTGTGAAGCTTGTTACCCAGAAAATAGATCAGCGAAGCTGTGCAAAAACGAGTGGGATGATGCAAATTGCGAGCACTGGGCTGGACTAGGCTTCTGCCAAAGAAGATCTGAAATAATGATTTACAAGTGCCAACGTGCTTGTAATTCGTGTCCAAAGGAACCAGTGAAAACTCGACCAGCTCGTCCAAGGGGTATTAAATGTGATGCACCGTGTAAAAATTGGCTTGAGAGAGGACAGTGTTCAACTAAGTGGAGAAGGCGCTGCTTGAGAACTTGTTTAGCTTTGGGTTGCGACGACGAGCAAGTTAAACCAGAAGGAGCCTGTTCTGAGCCTTTGGGTGTTGGGTGGACCCCCTCTCTGCCAGATAGCGCTTTTAACGCGTCATCAAGACTGGTGTCAGGTGATTGGGATTTTAGCGCTCGCAATGCTCGATTGTACCAAGAAGATAACTTCATCAGGAGAAGAATAGGAGGCTGGTGTGCACAACATCAAGACAGTAATCAGTGGTTGCAAGTAGATCTTGGAAAGATAAAGTTTGTGACGGCCGTTGCCACACAAGGTCGTGATAAATTCTTTGAACATGTCAAGTCGTATGAACTGGCTTTTAGTAAAGATGGACATCGCTGGAATCACTACAAAGAGAATGGAAGGACACGGATATTGCAAGGGAATTGTGATAACTTCACCCCTGTGGTTAACAGATTAATTCGACCAATCCAGGCCAGATTTGTCCGCTTTTATCCAAGAACTTACAACAATATATGTATGAGAGTGGAAATATACGGATGCAGCAGACAAAAGGGTTATGAAAAAAAGAAAACATCAGTTTCTGTGCATGGACTGCTATAG

Transcript

chr4Alt.g8942.t1

GGTCATAGCTGATGAATAGGACGATATTGAAGCAGCTAAACAGTGACTTCAAAGTGGACAAGTCTCTGGCCTGCATATTTTATGTGCGTGTGTTTGGTTTTCCTGTGATGACAGACTACGTTGAGATTTGAGGGAACGAAAATGAGCTTTTGCCGACTGTCGCTTTGGATTCTGATGGTGTCCAGTGTGCCAAGTTTAGCAGCAGCCGAGCAACCGCGCGATAACGATGAAGCGGAAGAGAACTCCAGTCCCAGAAGAATGCCGGATTTCTTGTTGTTTGGCGACATGAAATTAACAGACCACCAAAAAGTTTTGCTAAACATTTTTAGGAAACCACGTCATGGTTCGTCTTCTCTAAAACCTCCGGCTGCTACAAGAGAGAAAACGTTACTGTGGGAGAATGGAATCATTCCTTACGTGTTTGACTGCAGCTTACAGAATATGCCTGAACTTCAAAGGATTATTAGAGCAGCGATGGATGATTGGGAATCTAAGACTTGCATCAAGTTTGTGCCAAGAAAGGACGAGGAAAAAGAGAACGATTATGTCACGTTTTTCAGAGGATCTCATTGTTACAGTACAGTGGGCAAGGCCCGCAGCGCACGCCGGGAAGTATCTGTTGGATATGGATGCGAGTTTCATCATGTGATGCTCCATGAACTGGGTCACGTGATTGGATTTTGGCATGAGCAGAGCAGACCTGACAGAGATGATCATGTCAGAATTGTATGGAAGAATATCCTCAGAGGTTGGAAGCACGCTTTTGTGAAACAAACATGGCAAGCAGTGGATTCTATGAATGTAACATACGATTATTCCAGCATCATGCATTACAAATTCAACGCCTTTTCGCGCTCGCGTAATAGGAAAACCATACTGCCCCTGATAAGAGTACGGGCTCGCCCTTACAGAAGGATATCTAGATTGGATGCGCTTCAAGCCAATATGATGTACAAGTGCCATGCAATAAATCAGCAGCAGAAATCCTTGAACGAATCGACCAATAAAATACCAAAAAGAAAAAGGAGAGCAATCATTGGAAACCTGGTCAATATAAGAGGTCAAGTTCCAGAGTTAAAAAAGCAAGTCGATCCAAACTGCCGTGACACGAGGAGAGCCTGTGCTTTTTGGGCGCAAAGAGGTTTCTGTGAATCACGCCGTGACTTTATGCTTAAGGACTGTCAAATAAGCTGCAACTCTTGTGCTACAGTAAACAAAGCAAAGGAAGACAAACCAGATTCAGAGTGTGTCGATGTCAGGACCAACTGCCCAACTTTGGAAAAACGCGGCTATTGTCAAAAACGACCCGCCTACATGAACGTAAAGTGCAAGAAAAGCTGTAGATTTTGCGGTGAAGAAAAATGCATAGATCGAGATCCGAGATGTCGCGCATGGGCAAGATGGAAATTCTGCACAAGTGAACGTTACAAACACGTGATGTTACAGGCGTGTAGGAGGAGCTGTGCATTCTGCGTGGCAAAAACGCATGATTGCAAGGACAAGGTACCGTCTCGATGCCCAAGGCTAAAAGAAGAAGGATACTGCAAATCAGTCAAACCTGACGTTCGGCTTAACATGAGAAATATGTGTGCATTGACTTGTGGATTTTGCATAAAGACCATGGAAAGCGCCGTGGGGAATCAGAAACCTTCCATTAAATCTCCCTGTGTAGACACATTCAAAGGGTGTTATGGATGGTCGAGGCTTGGGTACTGTTTTTCCGATTGGAGAGGTCGCTTTATGAGAGACTACTGCAAACGAAGCTGCAACTTTTGCGCTTCTATTGATCCAGAATACACAGGTGAGAAGTGTTTGGACAATGAAATTACTTGTGAGTCTATGAAACAGACAGGGTATTGCGAATCAAAAGAATATAGAAGTTACATGGAATTTAACTGCAAGAGAACCTGTGGCTTTTGCCGAAGAAAGATAGCGGCAATGCCTACAACATGCGTCGACAAACACAGGCTTTGTAAATACTGGGCCGCGCAAGGGAATTGCTATATTATGTCTCGTTACATGATATCAAACTGTCCATTGGCCTGTAATATCTGTCATAAGGGAGTTTACGACAAACGTGTTAATCCTCGCTATGAAAGTAAGGCTTGCTTTGATAAACACACCAAGTGCTCCGAATGGACCGATATTGGTTACTGTGATATCTATTCCAACTTTATGTACAAGAAGTGCCCTCTAAGCTGTGAAGCTTGTTACCCAGAAAATAGATCAGCGAAGCTGTGCAAAAACGAGTGGGATGATGCAAATTGCGAGCACTGGGCTGGACTAGGCTTCTGCCAAAGAAGATCTGAAATAATGATTTACAAGTGCCAACGTGCTTGTAATTCGTGTCCAAAGGAACCAGTGAAAACTCGACCAGCTCGTCCAAGGGGTATTAAATGTGATGCACCGTGTAAAAATTGGCTTGAGAGAGGACAGTGTTCAACTAAGTGGAGAAGGCGCTGCTTGAGAACTTGTTTAGCTTTGGGTTGCGACGACGAGCAAGTTAAACCAGAAGGAGCCTGTTCTGAGCCTTTGGGTGTTGGGTGGACCCCCTCTCTGCCAGATAGCGCTTTTAACGCGTCATCAAGACTGGTGTCAGGTGATTGGGATTTTAGCGCTCGCAATGCTCGATTGTACCAAGAAGATAACTTCATCAGGAGAAGAATAGGAGGCTGGTGTGCACAACATCAAGACAGTAATCAGTGGTTGCAAGTAGATCTTGGAAAGATAAAGTTTGTGACGGCCGTTGCCACACAAGGTCGTGATAAATTCTTTGAACATGTCAAGTCGTATGAACTGGCTTTTAGTAAAGATGGACATCGCTGGAATCACTACAAAGAGAATGGAAGGACACGGATATTGCAAGGGAATTGTGATAACTTCACCCCTGTGGTTAACAGATTAATTCGACCAATCCAGGCCAGATTTGTCCGCTTTTATCCAAGAACTTACAACAATATATGTATGAGAGTGGAAATATACGGATGCAGCAGACAAAAGGGTTATGAAAAAAAGAAAACATCAGTTTCTGTGCATGGACTGCTATAGAAAGAGGCGATGAAAAGGAAACTTCTTGGCAAGATCTGTCTGCGAATCTTAAAAAGAAAGAACGGTTATGAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P42674	Blastula protease 10 OS=Paracentrotus lividus OX=7656 GN=BP10 PE=2 SV=1
P98068	Protein SpAN OS=Strongylocentrotus purpuratus OX=7668 GN=SPAN PE=2 SV=1
Q9U3S9	Zinc metalloproteinase nas-6 OS=Caenorhabditis elegans OX=6239 GN=nas-6 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01400 all species →	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR001506 all species →	Domain	Peptidase M12A	Interproscan
IPR034035 all species →	Domain	Astacin-like metallopeptidase domain	Interproscan
IPR006026 all species →	Domain	Peptidase, metallopeptidase	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10127 all species →	DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g8942.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.