Genomic Location: not available for this species
NR annotation: CAH1793272.1, unnamed protein product [Owenia fusiformis]
Species Calvadosia cruxmelitensis · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q8N357 | Solute carrier family 35 member F6 OS=Homo sapiens OX=9606 GN=SLC35F6 PE=1 SV=1 |
| Q5RFT1 | Solute carrier family 35 member F6 OS=Pongo abelii OX=9601 GN=SLC35F6 PE=2 SV=1 |
| Q8VE96 | Solute carrier family 35 member F6 OS=Mus musculus OX=10090 GN=Slc35f6 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000001 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000072 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000220 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000599 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000742 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001097 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0004390 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0005722 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0042443 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0061694 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00083 all species → | Sugar_tr | Sugar (and other) transporter | Family | Interproscan |
| PF07173 all species → | GRDP-like | Glycine-rich domain-containing protein-like | Family | Interproscan |
| PF12780 all species → | AAA_8 | P-loop containing dynein motor region D4 | Domain | Interproscan |
| PF12775 all species → | AAA_7 | P-loop containing dynein motor region | Domain | Interproscan |
| PF17857 all species → | AAA_lid_1 | AAA+ lid domain | Domain | Interproscan |
| PF20642 all species → | TAF1C_HB | TAF1C, helical bundle domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005828 all species → | Family | Major facilitator, sugar transporter-like | Interproscan |
| IPR036259 all species → | Homologous_superfamily | MFS transporter superfamily | Interproscan |
| IPR009836 all species → | Family | Glycine-rich domain-containing protein-like | Interproscan |
| IPR024317 all species → | Domain | Dynein heavy chain, AAA module D4 | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR041589 all species → | Domain | Dynein heavy chain 3, AAA+ lid domain | Interproscan |
| IPR026983 all species → | Family | Dynein heavy chain | Interproscan |
| IPR036397 all species → | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR001584 all species → | Domain | Integrase, catalytic core | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR050951 all species → | Family | Retrovirus-related Pol polyprotein | Interproscan |
| IPR038801 all species → | Family | TATA box-binding protein-associated factor RNA polymerase I subunit C | Interproscan |
| IPR049090 all species → | Domain | TAF1C, helical bundle domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24064 all species → | SOLUTE CARRIER FAMILY 22 MEMBER | Interproscan |
| PTHR34365 all species → | ENOLASE (DUF1399) | Interproscan |
| PTHR33198 all species → | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED | Interproscan |
| PTHR13146 all species → | UNCHARACTERIZED | Interproscan |
| PTHR46532 all species → | MALE FERTILITY FACTOR KL5 | Interproscan |
| PTHR37984 all species → | PROTEIN CBG26694 | Interproscan |
| PTHR15319 all species → | TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0022857 all species → | Molecular Function | transmembrane transporter activity | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0043231 all species → | Cellular Component | intracellular membrane-bounded organelle | Interproscan |
| GO:0005858 all species → | Cellular Component | axonemal dynein complex | Interproscan |
| GO:0007018 all species → | Biological Process | microtubule-based movement | Interproscan |
| GO:0030286 all species → | Cellular Component | dynein complex | Interproscan |
| GO:0045505 all species → | Molecular Function | dynein intermediate chain binding | Interproscan |
| GO:0051959 all species → | Molecular Function | dynein light intermediate chain binding | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0015074 all species → | Biological Process | DNA integration | Interproscan |
| GO:0001164 all species → | Molecular Function | RNA polymerase I core promoter sequence-specific DNA binding | Interproscan |
| GO:0001650 all species → | Cellular Component | fibrillar center | Interproscan |
| GO:0006360 all species → | Biological Process | transcription by RNA polymerase I | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K08202 | SLC22A4_5, OCTN; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5 | - | Transporters | ko02000 | deepkoala |
| K11790 | DTL, CDT2, DCAF2; denticleless | - | Ubiquitin system | ko04121 | deepkoala |
Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
