Gene detail

Detailed information of g8965.t1 in Montipora capitata

Genomic Location: Sc0000227:102105...126685
NR annotation: XP_029184768.1, phosphatidylinositol 3-kinase regulatory subunit alpha-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8965.t1

atgctcaagatggattcgggatgggcccaatttcgtgctctccatagtttcgaacctcgtgatccaagggaaattgccatacaagtagaagatgttatgattgtggcgaaacctgtgtctgattattccaactggctaactggggaaaatatgcgaacgcgtgagtggggagagtttcctggaaattatgtggaatatattggtgacacagacgactatccttcggcagagaatattgtacaaccgccgttacctccacctcgaccaccaaggacttctcttgcgacaaaacctcaagattctggacattcattgattgagaattctgctacaaaaccagtctggtgtttccaatgtgaggattttatctggggaattggacgccaggttttgagatgttcaaaatgtgagttatcatgccatccaaattgtgctacagatttatcagagacaccatgtgtaatctcaataagaaatgataatgatggtggtgaggatgatgatgatgactacatttctttcatcactgaccctgaagagtggcaagtggatgatgtgttgatttggcttgctgccacaaatcactacttgtatgctgaggtgttcagggaaaatgagattactggacagaagctgcgacaattaactgatgtatcactcagccagcttaacatcagggacagtacacataaacagtccctgttacttgcaattcaagagctttttactggacactcagagactggtggtcacttttttaaagaacagaactatgccacactgcagtggtgcgataagtgtggaaaatgcttgtgggggctgtaccggcagggtgtgcagtgcaccgagtgtggatttcaatgtcacaggatgtgcagttttgacaatgttgtatcatgcccaagggtgagccgcagaaaaagaagactgagtgatacagaagtaccaatatttggagctgaactgggagctcagtttataccttccaaccaaccagcaccaaccatagtgatgaaatgtgtccaagcaatagagaaagcaggcttaaatttgcttaatatccatggcattattccagcaggaagtgaaaagaattccctcagaactgccttaaaccaaaatgccaagggtgtaaacatggatgatgaggaatggaaaaatcctcactgtgcctctgcagttctaaagatgtatttaaatgagcttcctacttgtgtgtttaccgagcaaaaatatcctttttttataggtgcaagtaaaggttccattagtgaaaacatcccagaattagttgaaaccttaccagcagaaaacaagtctctccttacgtacctcttagagcatctttacaaggtctgcaggaatgttgactggaatgatatgtctgctcataaagtagcagctttgtttgcacctctgttgctgaggccaaatcgccggtatgccatgaagctggtttcaaaccatgaactagcagttaatattatagagcatcttatgcttaacggagattggacaaaaagacctccagtacccccaaggtcaaggaagcagaggcagtctgatatcgtggtagaaacacccgttgaacacatggagaagctggaggattgtccctggtattggggacagataaataaagagacagtcagtgacagactaaaagatcaaccggatgggacatttatcgttcgtgactctcgtggattccctggggagtacacattaacactaaggaaaggagggttgaacaaactaatccgtatcctgcataaggatggtttgtatgggttttcggagcctctgacattcatgtctgttgtcagccttataaaccactacaaaaccaggtcactgtcatcgtacaatcctaaactggatgtgaaattggaaacgcctctacaaaaatatgaacaggaggacgatgaagtaggagataactatggcaaggaccaggaacgcatctatttagaaagacttgaagcagttcacaaggtgtacatgcagaaatcggacgaatacgaagaaattcacaacaactatgtccagtgcgaacaggaaatcgcggattaccatgaagaacttgatgctcataaagaaattataaaaatgattaatgagcagatgacgctgcatgaaaaaactcaaaaagaagctccaccacaacatcgatcaatgtga

Transcript

g8965.t1

ATGCTCAAGATGGATTCGGGATGGGCCCAATTTCGTGCTCTCCATAGTTTCGAACCTCGTGATCCAAGGGAAATTGCCATACAAGTAGAAGATGTTATGATTGTGGCGAAACCTGTGTCTGATTATTCCAACTGGCTAACTGGGGAAAATATGCGAACGCGTGAGTGGGGAGAGTTTCCTGGAAATTATGTGGAATATATTGGTGACACAGACGACTATCCTTCGGCAGAGAATATTGTACAACCGCCGTTACCTCCACCTCGACCACCAAGGACTTCTCTTGCGACAAAACCTCAAGATTCTGGACATTCATTGATTGAGAATTCTGCTACAAAACCAGTCTGGTGTTTCCAATGTGAGGATTTTATCTGGGGAATTGGACGCCAGGTTTTGAGATGTTCAAAATGTGAGTTATCATGCCATCCAAATTGTGCTACAGATTTATCAGAGACACCATGTGTAATCTCAATAAGAAATGATAATGATGGTggtgaggatgatgatgatgactacaTTTCTTTCATCACTGACCCTGAAGAGTGGCAAGTGGATGATGTGTTGATTTGGCTTGCTGCCACAAATCACTACTTGTATGCTGAGGTGTTCAGGGAAAATGAGATTACTGGACAGAAGCTGCGACAATTAACTGATGTATCACTCAGCCAGCTTAACATCAGGGACAGTACACATAAACAGTCCCTGTTACTTGCAATTCAAGAGCTTTTTACTGGACACTCAGAGACTGGTGGTCACTTTTTTAAAGAACAGAACTATGCCACACTGCAGTGGTGCGATAAGTGTGGAAAATGCTTGTGGGGGCTGTACCGGCAGGGTGTGCAGTGCACCGAGTGTGGATTTCAATGTCACAGGATGTGCAGTTTTGACAATGTTGTATCATGCCCAAGGGTGAGCCGCAGAAAAAGAAGACTGAGTGATACAGaagTACCAATATTTGGAGCTGAACTGGGAGCTCAGTTTATACCTTCCAACCAACCAGCACCAACCATAGTGATGAAATGTGTCCAAGCAATAGAGAAAGCAGGCTTAAATTTGCTTAATATCCATGGCATTATTCCAGCAGGAAGTGAAAAGAATTCCCTCAGAACTGCCTTAAACCAAAATGCCAAGGGTGTAAACATGGATGATGAGGAATGGAAAAATCCTCACTGTGCCTCTGCAGTTCTAAAGATGTATTTAAATGAGCTTCCTACTTGTGTGTTTACCGAGCAAAAATATCCTTTTTTTATAGgtgCAAGTAAAGGTTCCATTAGTGAAAACATCCCAGAATTAGTTGAAACCTTACCAGCAGAAAACAAGTCTCTCCTTACGTACCTCTTAGAGCATCTTTACAAggtcTGCAGGAATGTTGACTGGAATGATATGTCTGCTCATAAAGTAGCAGCTTTGTTTGCACCTCTGTTGCTGAGGCCAAATCGCCGGTATGCCATGAAGCTGGTTTCAAACCATGAACTAGCAGTTAATATTATAGAGCATCTTATGCTTAACGGAGATTGGACAAAAAGACCTCCAGTACCCCCAAGGTCAAGGAAGCAGAGGCAGTCTGATATCGTGGTAGAAACACCCGTTGAACACATGGAGAAGCTGGAGGATTGTCCCTGGTATTGGGGACAGATAAATAAAGAGACAGTCAGTGACAGACTAAAAGATCAACCGGATGGGACATTTATCGTTCGTGACTCTCGTGGATTCCCTGGGGAGTACACATTAACACTAAGGAAAGGAGGGTTGAACAAACTAATCCGTATCCTGCATAAGGATGGTTTGTATGGGTTTTCGGAGCCTCTGACATTCATGTCTGTTGTCAGCCTTATAAACCACTACAAAACCAGGTCACTGTCATCGTACAATCCTAAACTGGATGTGAAATTGGAAACGCCTCTACAAAAATATGAACAGGAGGACGATGAAGTAGGAGATAACTATGGCAAGGACCAGGAACGCATCTATTTAGAAAGACTTGAAGCAGTTCACAAGGTGTACATGCAGAAATCGGACGAATACGAAGAAATTCACAACAACTATGTCCAGTGCGAACAGGAAATCGCGGATTACCATGAAGAACTTGATGCTCATAAAGAAATTATAAAAATGATTAATGAGCAGATGACGCTGCATGAAAAAACTCAAAAAGAAGCTCCACCACAACATCGATCAATGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P27986	Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Homo sapiens OX=9606 GN=PIK3R1 PE=1 SV=2
Q5R685	Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Pongo abelii OX=9601 GN=PIK3R1 PE=2 SV=1
Q8UUU2	Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Xenopus laevis OX=8355 GN=pik3r1-a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003289 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF16454 all species →	PI3K_P85_iSH2	Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain	Domain	Interproscan
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR051854 all species →	Family	Rho-type GTPase-activating protein	Interproscan
IPR032498 all species →	Domain	PI3K regulatory subunit p85-related , inter-SH2 domain	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46075 all species →	CHIMERIN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g8965.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g8965.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

270.5Max TPM

139.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	131.87	270.47
whole organisms · low pH treatment	15	15	146.82	243.17
whole organisms · extra low pH treatment pH treatment	12	12	144.55	256.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	270.47
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	244.46
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	230.42
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	212.69
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	199.86
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	197.91
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	169.94
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	166.64
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	166.38
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	153.17
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	138.14
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	104.79
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	101.20
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	84.27
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	63.19
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	54.42
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	51.49
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	50.04
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	45.19
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	42.66
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	21.92
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	243.17
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	229.38
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	202.49
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	197.87
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	196.82
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	187.04
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	183.93
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	170.01
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	151.43
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	111.53
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	107.54
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	105.83
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	40.12
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	38.91
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	36.21
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	256.03
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	214.43
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	198.51
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	197.35
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	183.03
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	170.92
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	156.50
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	127.40
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	96.27
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	48.48
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	47.80
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	37.88

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.