Detailed information of g897.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_012555807.1, uncharacterized protein LOC101241166 isoform X1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q3T0Z8Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2
P62306Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1
P62307Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyE2F

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00520Ion_transIon transport proteinFamilyInterproscan
PF07303Occludin_ELLOccludin homology domainDomainInterproscan
PF10390ELLRNA polymerase II elongation factor ELL FamilyInterproscan
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF12661hEGFHuman growth factor-like EGFDomainInterproscan
PF03146NtAAgrin NtA domainDomainInterproscan
PF02319E2F_TDPE2F/DP family winged-helix DNA-binding domainDomainInterproscan
PF16421E2F_CC-MBE2F transcription factor CC-MB domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR047575DomainSm domainInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR034100FamilySmall nuclear ribonucleoprotein FInterproscan
IPR016487FamilySm-like protein Lsm6/SmFInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR003968FamilyPotassium channel, voltage dependent, KvInterproscan
IPR005821DomainIon transport domainInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR042065Homologous_superfamilyE3 ubiquitin-protein ligase ELL-likeInterproscan
IPR031176FamilyELL/occludin familyInterproscan
IPR010844DomainOccludin homology domainInterproscan
IPR019464DomainRNA polymerase II elongation factor ELL, N-terminalInterproscan
IPR045130FamilyGDP-fucose protein O-fucosyltransferase 2-likeInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR050969FamilyDevelopmental Signaling ModulatorsInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR008993Homologous_superfamilyTissue inhibitor of metalloproteinases-like, OB-foldInterproscan
IPR013032Conserved_siteEGF-like, conserved siteInterproscan
IPR004850DomainNtA (N-terminal agrin) domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR003316DomainE2F/DP family, winged-helix DNA-binding domainInterproscan
IPR037241Homologous_superfamilyE2F-DP heterodimerization regionInterproscan
IPR032198DomainE2F transcription factor, CC-MB domainInterproscan
IPR015633FamilyE2F FamilyInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-FInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR11537VOLTAGE-GATED POTASSIUM CHANNELInterproscan
PTHR23288OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELLInterproscan
PTHR13398GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2Interproscan
PTHR14949EGF-LIKE-DOMAIN, MULTIPLE 7, 8Interproscan
PTHR46880RAS-ASSOCIATING DOMAIN-CONTAINING PROTEINInterproscan
PTHR12081TRANSCRIPTION FACTOR E2FInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0000387Biological Processspliceosomal snRNP assemblyInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0034715Cellular ComponentpICln-Sm protein complexInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0005249Molecular Functionvoltage-gated potassium channel activityInterproscan
GO:0008076Cellular Componentvoltage-gated potassium channel complexInterproscan
GO:0016021Cellular ComponentmembraneInterproscan
GO:0071805Biological Processpotassium ion transmembrane transportInterproscan
GO:0006813Biological Processpotassium ion transportInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0000987Molecular Functioncis-regulatory region sequence-specific DNA bindingInterproscan
GO:0008023Cellular Componenttranscription elongation factor complexInterproscan
GO:0032968Biological Processpositive regulation of transcription elongation by RNA polymerase IIInterproscan
GO:0042795Biological ProcesssnRNA transcription by RNA polymerase IIInterproscan
GO:0006368Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0036066Biological Processprotein O-linked fucosylationInterproscan
GO:0046922Molecular Functionpeptide-O-fucosyltransferase activityInterproscan
GO:0005102Molecular Functionsignaling receptor bindingInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0009986Cellular Componentcell surfaceInterproscan
GO:0048856Biological Processanatomical structure developmentInterproscan
GO:0043113Biological Processreceptor clusteringInterproscan
GO:0043236Molecular Functionlaminin bindingInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0090575Cellular ComponentRNA polymerase II transcription regulator complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04889KCNC3, KV3.3; potassium voltage-gated channel Shaw-related subfamily C member 3-DNA replication proteinsko03032deepkoala
Transcription machineryko03021deepkoala
Ion channelsko04040deepkoala

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