Gene detail

Detailed information of g899.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_031561578.1, tetraspanin-13-like isoform X1 [Actinia tenebrosa]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CQ88	Tetraspanin-31 OS=Mus musculus OX=10090 GN=Tspan31 PE=1 SV=1
Q5U1V9	Tetraspanin-31 OS=Rattus norvegicus OX=10116 GN=Tspan31 PE=2 SV=1
Q12999	Tetraspanin-31 OS=Homo sapiens OX=9606 GN=TSPAN31 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000684 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000701 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001754 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002195 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002660 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004219 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00230 all species →	MIP	Major intrinsic protein	Family	Interproscan
PF00335 all species →	Tetraspanin	Tetraspanin family	Family	Interproscan
PF13517 all species →	FG-GAP_3	FG-GAP-like repeat	Repeat	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF08645 all species →	PNK3P	Polynucleotide kinase 3 phosphatase	Family	Interproscan
PF03416 all species →	Peptidase_C54	Peptidase family C54	Family	Interproscan
PF01138 all species →	RNase_PH	3' exoribonuclease family, domain 1	Domain	Interproscan
PF03725 all species →	RNase_PH_C	3' exoribonuclease family, domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034294 all species →	Family	Aquaporin transporter	Interproscan
IPR023271 all species →	Homologous_superfamily	Aquaporin-like	Interproscan
IPR022357 all species →	Conserved_site	Major intrinsic protein, conserved site	Interproscan
IPR000425 all species →	Family	Major intrinsic protein	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR018499 all species →	Family	Tetraspanin/Peripherin	Interproscan
IPR028994 all species →	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR013517 all species →	Repeat	FG-GAP repeat	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR006549 all species →	Domain	HAD-superfamily hydrolase,subfamily IIIA	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR006551 all species →	Domain	Polynucleotide 3'-phosphatase	Interproscan
IPR013954 all species →	Family	Polynucleotide kinase 3 phosphatase	Interproscan
IPR005078 all species →	Family	Peptidase C54	Interproscan
IPR046792 all species →	Domain	Peptidase C54, catalytic domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR052160 all species →	Family	Gypsy Retrotransposon Integrase-like	Interproscan
IPR012162 all species →	Family	Polyribonucleotide nucleotidyltransferase	Interproscan
IPR001247 all species →	Domain	Exoribonuclease, phosphorolytic domain 1	Interproscan
IPR027408 all species →	Homologous_superfamily	PNPase/RNase PH domain superfamily	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR015847 all species →	Domain	Exoribonuclease, phosphorolytic domain 2	Interproscan
IPR036345 all species →	Homologous_superfamily	Exoribonuclease, PH domain 2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19139 all species →	AQUAPORIN TRANSPORTER	Interproscan
PTHR38681 all species →	RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED	Interproscan
PTHR19282 all species →	TETRASPANIN	Interproscan
PTHR46580 all species →	SENSOR KINASE-RELATED	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR12083 all species →	BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE	Interproscan
PTHR22624 all species →	CYSTEINE PROTEASE ATG4	Interproscan
PTHR47266 all species →	ENDONUCLEASE-RELATED	Interproscan
PTHR11252 all species →	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006833 all species →	Biological Process	water transport	Interproscan
GO:0015250 all species →	Molecular Function	water channel activity	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0015267 all species →	Molecular Function	channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0046403 all species →	Molecular Function	polynucleotide 3'-phosphatase activity	Interproscan
GO:0046404 all species →	Molecular Function	ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity	Interproscan
GO:0046939 all species →	Biological Process	obsolete nucleotide phosphorylation	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0019786 all species →	Molecular Function	protein-phosphatidylethanolamide deconjugating activity	Interproscan
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000958 all species →	Biological Process	mitochondrial mRNA catabolic process	Interproscan
GO:0000965 all species →	Biological Process	mitochondrial RNA 3'-end processing	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004654 all species →	Molecular Function	polyribonucleotide nucleotidyltransferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0006402 all species →	Biological Process	mRNA catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17356	TSPAN13_31; tetraspanin-13/31	-	Structural proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.