Gene detail

Detailed information of g8993.t1 in Acropora digitifera

Genomic Location: chr4Alt:15363006...15377982
NR annotation: XP_015780641.1, PREDICTED: rhophilin-2-B-like isoform X1 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8993.t1

ATGCCAGCGAGAATGACAATGGAAGTTAAGTTGAAGGATAGCGTCGACTCGTCTTCGTCTGTTAGGAAGAAAGACAGTGCGGCTATAGTGGTCGAAGGAGAATTTGGACCTCGTCAAACATCGGCTCGATGGAGACTCCAGCACAAACGACAAATTTTGAATAAGAAAATACTGAGACAGACGAAATTGCGAGACGGCGCAGAAAACTTGATGAAAGCCCTCAGAATCACAAACGATCGGAAAACTAAACTTGCTGCCAAGACGGAACTGAACTTTGCTAATTCCCAGTTGGAGGCACTGAAGGAAGAACTTGAAGGGATAAACAGCACCCTAGATGTGTATCAGTTTGATCGGAGTGTTGAACACCAAATACCTTTGATAGCGGTGGGTCTCAGAGAAACAAAAGACCTTGATTTTAAAGATCATTTCAAGGACTTTATTTTGGATCATTATAGTGAGGAACCAGAAAAATATGAAAAGGAGCTGGATCTCTTTGAAAACATGAGAAAGGAAGCAGTTTCTAAAGTTAACAGAGATGAAACTGGTGTTCATGCCTTGCTTATATATTATAATCAACTCTATTTTGTGGAAAGGAAGTTCTTCCCAAAAGGAAAGGATAATGCTATGCCTGTCTATTTTCACTGGTTTGATACTACCTCCGGTCTGCCAAAAATACAAAGATCTATTGCTTTTGAAAAGGCCAGCATTCTTTTTAACATTGGATCGATTTGGAGCCAGATTGGTGCTAAACAAGACAGAAGAACACAATCAGGCCTTGAAAAGGCTATTGATGCTTTTAATAAAGCTGCAGGTGCCTTCAAATCAATCAAAGAGAACTTTATTAATTCTCCGACTGCTGATTTGACGACGGAGCTAATGGACATGCTCATAGCTGTTATGCTGGCTCAATCACAGCTCTGCATTTGGGAAGATTGTGTACTAAAAGGAATCAAAGATACATTAGCAGACCTGATAAGTGCTGCTCAAGAGTGTGCTGAGATCAGCCATAGATATAAGAAGGCTCAAATGATGATGAACGCAGGGGTCTGTCTTTGTCGTGTTCCCTCTTCTTGGAAAAGCATGATGAATATCTTGTGTCTTCACTTCAAAGCTTTGTCTCATTTTTTTGTTGCTGATGGGCTTCTGAAAAACATTGCAGATTCTAATGATGACAAGCACAAAGAGATATTAACTTCATTACTGCAGAGTTCTCAGCCAGACAGTGATGCAAATAGAACCAAGCAAGCCAAGGCTCACCTGCATTCTGCATTGAAATCTCATGAGGAAGCCATGAAAGCCAGACAGATTTGTAGACATTGTAGACAAATAGCAGGACTACAAAAGGCTCTTCATGATGCTCGTGTGAAAAGTACTAACACACTGGTTGCCATGGAAGAAGAAGATGATTTTGATGATCCTATGACACCAATTTCTGTCAAAGCATTGGCAAGAGTCAAAGCAACTTGTATTCTGCCAAACTTCTGCAGTGCCTCAGTAGAAGACTTGTTTCACAGGCTGGGTCCAGTACATGTTTTTAATGCGCAGTTAGCATGGAGTGCACCACGATCTATTGAGCTGGAAAGAAAAAATGGTGGATATGGTTTCAGTGTTATTGGCTCTGCTCCTGTGATTATCCAGAGTGTGGAAAATGATGGAGCTGCAAAGGAAGCTGGAATTCAAGTAGGAGACATAATTGTTCAAGTGAACAAAACAGACTGCAAGTGGGGTGACCACACATCTGTAGTGTCGTTGATTCGAAAGACTGATGCTAGTGTGACCATTGATGTTGTGACGCCCGTGTCTCTCAAGGAAATTGCTGAGATATACAACTGCAAACTAACCAAGAATGAGCAAGTTGCAACAAGTGATTATGGCAGTTCGGTTGGCAGTGAGAGTTCTGATTCATCACGAAACAGTACTCTTACTGGAGTGTATTCCCTCACAGGAAGCACTTCGTCTGGTTCAGCATCTTGTACTGCCTCTCGCCACAGCGTTGTCTTGGCGACTGGCAATTCTTCAATATTGTGGTAG

Transcript

chr4Alt.g8993.t1

GGTGGAATTTCTTGATATCACCAACTAAAGCCACCAACTAGCTACCAAACAGCAACGAAGGATCCCATGCCAGCGAGAATGACAATGGAAGTTAAGTTGAAGGATAGCGTCGACTCGTCTTCGTCTGTTAGGAAGAAAGACAGTGCGGCTATAGTGGTCGAAGGAGAATTTGGACCTCGTCAAACATCGGCTCGATGGAGACTCCAGCACAAACGACAAATTTTGAATAAGAAAATACTGAGACAGACGAAATTGCGAGACGGCGCAGAAAACTTGATGAAAGCCCTCAGAATCACAAACGATCGGAAAACTAAACTTGCTGCCAAGACGGAACTGAACTTTGCTAATTCCCAGTTGGAGGCACTGAAGGAAGAACTTGAAGGGATAAACAGCACCCTAGATGTGTATCAGTTTGATCGGAGTGTTGAACACCAAATACCTTTGATAGCGGTGGGTCTCAGAGAAACAAAAGACCTTGATTTTAAAGATCATTTCAAGGACTTTATTTTGGATCATTATAGTGAGGAACCAGAAAAATATGAAAAGGAGCTGGATCTCTTTGAAAACATGAGAAAGGAAGCAGTTTCTAAAGTTAACAGAGATGAAACTGGTGTTCATGCCTTGCTTATATATTATAATCAACTCTATTTTGTGGAAAGGAAGTTCTTCCCAAAAGGAAAGGATAATGCTATGCCTGTCTATTTTCACTGGTTTGATACTACCTCCGGTCTGCCAAAAATACAAAGATCTATTGCTTTTGAAAAGGCCAGCATTCTTTTTAACATTGGATCGATTTGGAGCCAGATTGGTGCTAAACAAGACAGAAGAACACAATCAGGCCTTGAAAAGGCTATTGATGCTTTTAATAAAGCTGCAGGTGCCTTCAAATCAATCAAAGAGAACTTTATTAATTCTCCGACTGCTGATTTGACGACGGAGCTAATGGACATGCTCATAGCTGTTATGCTGGCTCAATCACAGCTCTGCATTTGGGAAGATTGTGTACTAAAAGGAATCAAAGATACATTAGCAGACCTGATAAGTGCTGCTCAAGAGTGTGCTGAGATCAGCCATAGATATAAGAAGGCTCAAATGATGATGAACGCAGGGGTCTGTCTTTGTCGTGTTCCCTCTTCTTGGAAAAGCATGATGAATATCTTGTGTCTTCACTTCAAAGCTTTGTCTCATTTTTTTGTTGCTGATGGGCTTCTGAAAAACATTGCAGATTCTAATGATGACAAGCACAAAGAGATATTAACTTCATTACTGCAGAGTTCTCAGCCAGACAGTGATGCAAATAGAACCAAGCAAGCCAAGGCTCACCTGCATTCTGCATTGAAATCTCATGAGGAAGCCATGAAAGCCAGACAGATTTGTAGACATTGTAGACAAATAGCAGGACTACAAAAGGCTCTTCATGATGCTCGTGTGAAAAGTACTAACACACTGGTTGCCATGGAAGAAGAAGATGATTTTGATGATCCTATGACACCAATTTCTGTCAAAGCATTGGCAAGAGTCAAAGCAACTTGTATTCTGCCAAACTTCTGCAGTGCCTCAGTAGAAGACTTGTTTCACAGGCTGGGTCCAGTACATGTTTTTAATGCGCAGTTAGCATGGAGTGCACCACGATCTATTGAGCTGGAAAGAAAAAATGGTGGATATGGTTTCAGTGTTATTGGCTCTGCTCCTGTGATTATCCAGAGTGTGGAAAATGATGGAGCTGCAAAGGAAGCTGGAATTCAAGTAGGAGACATAATTGTTCAAGTGAACAAAACAGACTGCAAGTGGGGTGACCACACATCTGTAGTGTCGTTGATTCGAAAGACTGATGCTAGTGTGACCATTGATGTTGTGACGCCCGTGTCTCTCAAGGAAATTGCTGAGATATACAACTGCAAACTAACCAAGAATGAGCAAGTTGCAACAAGTGATTATGGCAGTTCGGTTGGCAGTGAGAGTTCTGATTCATCACGAAACAGTACTCTTACTGGAGTGTATTCCCTCACAGGAAGCACTTCGTCTGGTTCAGCATCTTGTACTGCCTCTCGCCACAGCGTTGTCTTGGCGACTGGCAATTCTTCAATATTGTGGTAGCACTTTGAGATATGCTGTGCTAGATCCAGAACTGACATAAGTGACTAGTAGAAATTAAAAATAAAGAGGTCGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63ZR5	Rhophilin-2-B OS=Xenopus laevis OX=8355 GN=rhpn2-b PE=2 SV=1
Q8IUC4	Rhophilin-2 OS=Homo sapiens OX=9606 GN=RHPN2 PE=1 SV=1
Q6DJJ6	Rhophilin-2-A OS=Xenopus laevis OX=8355 GN=rhpn2-a PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF03097 all species →	BRO1	BRO1-like domain	Repeat	Interproscan
PF02185 all species →	HR1	Hr1 repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR004328 all species →	Domain	BRO1 domain	Interproscan
IPR047138 all species →	Family	Rhophilin-1/2	Interproscan
IPR011072 all species →	Domain	HR1 rho-binding domain	Interproscan
IPR036274 all species →	Homologous_superfamily	HR1 repeat superfamily	Interproscan
IPR038499 all species →	Homologous_superfamily	BRO1 domain superfamily	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23031 all species →	RHOPHILIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0051497 all species →	Biological Process	negative regulation of stress fiber assembly	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g8993.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g8993.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

53.8Max TPM

25.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	25.87	53.82

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	53.82
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	49.13
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	35.36
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	34.17
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	31.37
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	31.22
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	31.14
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	30.45
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	30.21
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	29.97
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	28.90
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	28.80
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	28.53
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	28.27
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	27.36
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	27.01
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	26.69
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	25.75
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	24.64
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	24.59
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	24.59
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	24.35
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	24.22
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	23.26
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	23.20
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	20.82
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	20.02
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	19.81
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	19.58
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	19.57
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	19.51
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	19.35
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	19.33
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	18.35
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	17.89
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	17.70
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	17.57
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	17.22
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	15.11

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.