Gene detail

Detailed information of g9.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_109069590.1, chorismate synthase [Azospirillum sp. TSH58]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B6IRC6	Chorismate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=aroC PE=3 SV=1
Q13BI7	Chorismate synthase OS=Rhodopseudomonas palustris (strain BisB5) OX=316057 GN=aroC PE=3 SV=1
Q2RR25	Chorismate synthase OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=aroC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000101 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000220 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000284 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000437 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000750 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001492 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004266 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007872 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0017614 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0017712 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0018187 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0024789 (this species only) · gene tree & orthology
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF01753 all species →	zf-MYND	MYND finger	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF06480 all species →	FtsH_ext	FtsH Extracellular	Family	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF02114 all species →	Phosducin	Phosducin	Domain	Interproscan
PF00067 all species →	p450	Cytochrome P450	Domain	Interproscan
PF08501 all species →	Shikimate_dh_N	Shikimate dehydrogenase substrate binding domain	Domain	Interproscan
PF01121 all species →	CoaE	Dephospho-CoA kinase	Domain	Interproscan
PF01488 all species →	Shikimate_DH	Shikimate / quinate 5-dehydrogenase	Family	Interproscan
PF03618 all species →	Kinase-PPPase	Kinase/pyrophosphorylase	Family	Interproscan
PF01264 all species →	Chorismate_synt	Chorismate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050185 all species →	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR050205 all species →	Family	Calcium-dependent Serine/Threonine Protein Kinases	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011546 all species →	Domain	Peptidase M41, FtsH extracellular	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR050928 all species →	Family	ATP-dependent Zinc Metalloprotease	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051499 all species →	Family	Phosducin-like regulator	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR001200 all species →	Family	Phosducin	Interproscan
IPR023196 all species →	Homologous_superfamily	Phosducin, N-terminal domain superfamily	Interproscan
IPR024253 all species →	Domain	Phosducin, thioredoxin-like domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036396 all species →	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR001128 all species →	Family	Cytochrome P450	Interproscan
IPR050182 all species →	Family	Cytochrome P450 family 2	Interproscan
IPR017972 all species →	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR002401 all species →	Family	Cytochrome P450, E-class, group I	Interproscan
IPR001977 all species →	Family	Dephospho-CoA kinase	Interproscan
IPR011342 all species →	Family	Shikimate dehydrogenase	Interproscan
IPR013708 all species →	Domain	Shikimate dehydrogenase substrate binding, N-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR022893 all species →	Family	Shikimate dehydrogenase family	Interproscan
IPR046346 all species →	Homologous_superfamily	Aminoacid dehydrogenase-like, N-terminal domain superfamily	Interproscan
IPR006151 all species →	Domain	Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase	Interproscan
IPR005177 all species →	Family	Bifunctional kinase-pyrophosphorylase	Interproscan
IPR000453 all species →	Family	Chorismate synthase	Interproscan
IPR020541 all species →	Conserved_site	Chorismate synthase, conserved site	Interproscan
IPR035904 all species →	Homologous_superfamily	Chorismate synthase AroC superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan
PTHR24349 all species →	SERINE/THREONINE-PROTEIN KINASE	Interproscan
PTHR43655 all species →	ATP-DEPENDENT PROTEASE	Interproscan
PTHR46052 all species →	PHOSDUCIN-LIKE PROTEIN	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR24300 all species →	CYTOCHROME P450 508A4-RELATED	Interproscan
PTHR21089 all species →	SHIKIMATE DEHYDROGENASE	Interproscan
PTHR21085 all species →	CHORISMATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0004683 all species →	Molecular Function	calcium/calmodulin-dependent protein kinase activity	Interproscan
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009931 all species →	Molecular Function	calcium-dependent protein serine/threonine kinase activity	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0046777 all species →	Biological Process	protein autophosphorylation	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004176 all species →	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005745 all species →	Cellular Component	m-AAA complex	Interproscan
GO:0034982 all species →	Biological Process	mitochondrial protein processing	Interproscan
GO:0008277 all species →	Biological Process	regulation of G protein-coupled receptor signaling pathway	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0006082 all species →	Biological Process	organic acid metabolic process	Interproscan
GO:0006805 all species →	Biological Process	xenobiotic metabolic process	Interproscan
GO:0016712 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0004140 all species →	Molecular Function	dephospho-CoA kinase activity	Interproscan
GO:0015937 all species →	Biological Process	coenzyme A biosynthetic process	Interproscan
GO:0004764 all species →	Molecular Function	shikimate 3-dehydrogenase (NADP+) activity	Interproscan
GO:0019632 all species →	Biological Process	shikimate metabolic process	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0009423 all species →	Biological Process	chorismate biosynthetic process	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan
GO:0004107 all species →	Molecular Function	chorismate synthase activity	Interproscan
GO:0009073 all species →	Biological Process	aromatic amino acid family biosynthetic process	Interproscan
GO:0010181 all species →	Molecular Function	FMN binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01736	aroC; chorismate synthase	EC:4.2.3.5	Phenylalanine, tyrosine and tryptophan biosynthesis	ko00400	deepkoala
K10379	BFSP2; phakinin	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.