Gene detail

Detailed information of g90.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_249035174.1, DEAD/DEAH box helicase [Pseudemcibacter aquimaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q06683	Putative ATP-dependent helicase IRC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IRC3 PE=1 SV=1
Q9GPT6	Elongator complex protein 6 OS=Dictyostelium discoideum OX=44689 GN=elp6 PE=3 SV=1
Q00341	Vigilin OS=Homo sapiens OX=9606 GN=HDLBP PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000012 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000033 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001608 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002113 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004242 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005737 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008065 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0011911 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0018299 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0022444 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0022451 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013 all species →	KH_1	KH domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF10571 all species →	UPF0547	Uncharacterised protein family UPF0547	Domain	Interproscan
PF11938 all species →	DUF3456	TLR4 regulator and MIR-interacting MSAP	Family	Interproscan
PF10481 all species →	CENP-F_N	Cenp-F N-terminal domain	Coiled-coil	Interproscan
PF09807 all species →	ELP6	Elongation complex protein 6	Family	Interproscan
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050742 all species →	Family	Helicase and Restriction-Modification Enzyme	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR018886 all species →	Domain	Uncharacterised domain UPF0547	Interproscan
IPR021852 all species →	Domain	Domain of unknown function DUF3456	Interproscan
IPR049941 all species →	Family	Lysophospholipid acyltransferase 7/Porcupine-like	Interproscan
IPR018463 all species →	Domain	Centromere protein Cenp-F, N-terminal	Interproscan
IPR043513 all species →	Family	Centromere protein Cenp-F	Interproscan
IPR018627 all species →	Family	Elongator complex protein 6	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR050373 all species →	Family	Fibrinogen C-terminal domain-containing protein	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10627 all species →	SCP160	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR47396 all species →	TYPE I RESTRICTION ENZYME ECOKI R PROTEIN	Interproscan
PTHR13906 all species →	PORCUPINE	Interproscan
PTHR18874 all species →	CMF/LEK/CENP CELL DIVISION-RELATED	Interproscan
PTHR16184 all species →	ELONGATOR COMPLEX PROTEIN 6	Interproscan
PTHR19143 all species →	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005844 all species →	Cellular Component	obsolete polysome	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0030258 all species →	Biological Process	lipid modification	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0000775 all species →	Cellular Component	chromosome, centromeric region	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0010389 all species →	Biological Process	regulation of G2/M transition of mitotic cell cycle	Interproscan
GO:0051310 all species →	Biological Process	metaphase chromosome alignment	Interproscan
GO:0070840 all species →	Molecular Function	dynein complex binding	Interproscan
GO:0002098 all species →	Biological Process	tRNA wobble uridine modification	Interproscan
GO:0033588 all species →	Cellular Component	elongator holoenzyme complex	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22816	CNPY3_4; protein canopy 3/4	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.