Detailed information of g90.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_249035174.1, DEAD/DEAH box helicase [Pseudemcibacter aquimaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q06683Putative ATP-dependent helicase IRC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IRC3 PE=1 SV=1
Q9GPT6Elongator complex protein 6 OS=Dictyostelium discoideum OX=44689 GN=elp6 PE=3 SV=1
Q00341Vigilin OS=Homo sapiens OX=9606 GN=HDLBP PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00013KH_1KH domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF10571UPF0547Uncharacterised protein family UPF0547DomainInterproscan
PF11938DUF3456TLR4 regulator and MIR-interacting MSAPFamilyInterproscan
PF10481CENP-F_NCenp-F N-terminal domainCoiled-coilInterproscan
PF09807ELP6Elongation complex protein 6FamilyInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036612Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR004087DomainK Homology domainInterproscan
IPR004088DomainK Homology domain, type 1Interproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR050742FamilyHelicase and Restriction-Modification EnzymeInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR018886DomainUncharacterised domain UPF0547Interproscan
IPR021852DomainDomain of unknown function DUF3456Interproscan
IPR049941FamilyLysophospholipid acyltransferase 7/Porcupine-likeInterproscan
IPR018463DomainCentromere protein Cenp-F, N-terminalInterproscan
IPR043513FamilyCentromere protein Cenp-FInterproscan
IPR018627FamilyElongator complex protein 6Interproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10627SCP160Interproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR47396TYPE I RESTRICTION ENZYME ECOKI R PROTEINInterproscan
PTHR13906PORCUPINEInterproscan
PTHR18874CMF/LEK/CENP CELL DIVISION-RELATEDInterproscan
PTHR16184ELONGATOR COMPLEX PROTEIN 6Interproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005844Cellular Componentobsolete polysomeInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016746Molecular Functionacyltransferase activityInterproscan
GO:0030258Biological Processlipid modificationInterproscan
GO:0000278Biological Processmitotic cell cycleInterproscan
GO:0000775Cellular Componentchromosome, centromeric regionInterproscan
GO:0000922Cellular Componentspindle poleInterproscan
GO:0008017Molecular Functionmicrotubule bindingInterproscan
GO:0010389Biological Processregulation of G2/M transition of mitotic cell cycleInterproscan
GO:0051310Biological Processmetaphase chromosome alignmentInterproscan
GO:0070840Molecular Functiondynein complex bindingInterproscan
GO:0002098Biological ProcesstRNA wobble uridine modificationInterproscan
GO:0033588Cellular Componentelongator holoenzyme complexInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K22816CNPY3_4; protein canopy 3/4-Chaperones and folding catalystsko03110deepkoala

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