Gene detail

Detailed information of g900.t1 in Tripedalia maipoensis

Genomic Location: scaffold_1:45113623...45115740
NR annotation: no NCBI-NR hit recorded
Species abbreviation TMAIP · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g900.t1

ATGGCGACCAAGAACCTAAATCAGTTGCTTACGAATTTACCGCAGTTACAAAATGTTATTAAAAAGGACCCTGAAACTTACAAGGACGAGTTTTTGCAACAATGGAGTCACTTTCAATCAGCTTTGGAAGTCTTCAGGCTGAGTCCTTCTTCACAGTCTCAGGAGTTTGAGGCCTTGATTACATTCCTCAGCCAGGTTGCTCACTGCTATCCTGAAGAGCTTGAAGCGCTCCCAGAGATACTTGGACAGCTTCTTGAATCTCACCACGAAACCATGGATAGTGACTTGAGAATGACCCTCTGCAAGTCTCTAATTCTTCTCCGAAACAAGGGGCTGGTGTCCCCGCTTAGCACACTACAACTTTTCTTCAAAATGCTTCGTTGCAAAGATAAGTTACTAAGGAAGACCTTGTTTGTCCACATTGTATCCGACATAAAAAATATGAACTCAAAGCACAAGAATAACAAAATAAACACAGCGTTGCAGAACTACATGTTCAGCATGTTAAAGGACAATCATGTTGTGGCCGCGAAAACATCCTTGGATGCTATGATAGAATTGTACAGGAGAAATGTGTGGCATGATTCTAAAACAGTAAACGTTATTGTTACTGCATGCTTTTCAAAGGTGACGAAAGTGATGGTCACTGCTCTAAACTTTTTTCTTGGTTCTGATGCAGAGGCAGAAGATGCTAGCGACTCGGAAAGCGAAGACGACGCTTCAAGTGCACGGCATCTCATTCATGCAAGTGGGGTAAAAAAGAAAAACAGCAAGAAGAAAAGGAAACTAGAAAAGGCCCTTGCGCTTCTGCGAAAGTCAAAGAAGAAGAGCAAGCCTTTAACCTTTAACTTCTCAGCAATACACCTCGTTCACGATCCTCAAGGTTTTGCTGAAAAGCTGTTCCAGCAAGTAGAGTCATCAACAGGCAAGTTTGAGATTAAGCTCATGATGCTTAATCTTATTTCAAGGCTGATTGGGATTCATGAACTGATCTTGTTGAATTTCTACCCATTTGTTCAGAGATTCTTGCAACCACACCAAAGAGAAGTCACAAAGTTTTTAACTTACTTGGCTCAAGCTTGCCATCAGTTGGTTCCACCTGATGCTATAGAGCCTGCTATCAGAGCCATTGTAAACAATTTTGTAACAGAACGGAACTCCTTTGAAGTCATGTCTGTTGGAATAAATGCTGTTCGAGAAGTATGCAATCGCTGCCCCCTTTCTATGTCTTCAGAGCTTCTTCAAGACTTGGCTCTGTACAAGAAAGCAAAGAATAAAGGTGTTATAATGGCTACTAAGTCACTTATTCAGTTATATCGTAAAGTGAACCCTGAAATTCTTCATAAAAAGGATCGTGGACACCCTACCTATGCTAGTTCTGACAACAAATGTACTGATTATGGAGAAGTCAAAGCACCAAGTTTTGTACCAGGTACAGAGCTATTACCTGATATAGAGAAGGAGGAAGCAGACGATCATGATGAAGAAGATTTATCTGATGATGACATGTCTGATGGTGATTGGATAGATGTATCTCATTCTTCAGATGAAGAGCAGTCTTGTGAGGAAGAGAATGGCGATGAAGAATGTTTAGATCAAGATAAAACTCTTAGTGTTATGCAGGGGTTGGATTCTCAAGGTTCTCAGAAATCTCCAAATCCAGACTCCACCCTGGTTTCTAAGGCAGAGCATATTAGTAGCACCAGAATATTAACAGATAGAGACTTTAAAGCTATTGAAAAACAGAAGATCACAACTGCAGTGTTGGGACCAACTGGAAAGCGGAAAAGAAAAAGCAAAGAAGTAATACAGGCACCTAATAGCGAACTTGTTAGTGAAAGTACTATTCTGAACCTTTATAAAAGGCCAAAACAAAGCAAAGAGGAAAGAGTTGCAAGTACAAAAGATGGAAGAGACAAGAAGTTCAAACCAGAACCAAAGAAAAAGAGATACAGTGAATTTGCTAGTACCACAAACAAAGAAAAAATGAAAAAGAAGCCTTTCATGATGATATCTCATTCCAAGAATGCTAGGACCAAAAGGAAGAGGTCCTTTAGAGAAAAACAAATAGCTCTTAGGGACTCTTTATTGAAGAAGCAGAAGTTAAAGCAAAAGTAG

Transcript

g900.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08158 all species →	SDA1_HEAT	SDA1, HEAT repeat	Repeat	Interproscan
PF21638 all species →	SDA1_C	SDA1, C-terminal	Domain	Interproscan
PF05285 all species →	SDA1_dom	SDA1, conserved domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027312 all species →	Family	Sda1	Interproscan
IPR012977 all species →	Domain	SDA1, N-terminal	Interproscan
IPR048292 all species →	Domain	SDA1, C-terminal domain	Interproscan
IPR007949 all species →	Domain	SDA1, middle domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12730 all species →	HSDA/SDA1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000055 all species →	Biological Process	ribosomal large subunit export from nucleus	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0042273 all species →	Biological Process	ribosomal large subunit biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14856	SDA1, SDAD1; protein SDA1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.