Gene detail

Detailed information of g901.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_003390483.1, PREDICTED: myosin-2 essential light chain-like isoform X2 [Amphimedon queenslandica]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54357	Myosin-2 essential light chain OS=Drosophila melanogaster OX=7227 GN=Mlc-c PE=1 SV=1
P02605	Myosin light chain 3, skeletal muscle isoform OS=Gallus gallus OX=9031 PE=1 SV=3
P02604	Myosin light chain 1, skeletal muscle isoform OS=Gallus gallus OX=9031 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000015 (this species only)
Orthogroup (gene family)	OG0000038 (this species only)
Orthogroup (gene family)	OG0000606 (this species only)
Orthogroup (gene family)	OG0001212 (this species only)
Orthogroup (gene family)	OG0002543 (this species only)
Orthogroup (gene family)	OG0004215 (this species only)
Orthogroup (gene family)	OG0004521 (this species only)
Orthogroup (gene family)	OG0005892 (this species only)
Orthogroup (gene family)	OG0015248 (this species only)
Orthogroup (gene family)	OG0172068 (this species only)
Orthogroup (gene family)	OG0172423 (this species only)
Orthogroup (gene family)	OG0172612 (this species only)
Orthogroup (gene family)	OG0173153 (this species only)
Orthogroup (gene family)	OG0174008 (this species only)
Orthogroup (gene family)	OG0174204 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013 all species →	KH_1	KH domain	Domain	Interproscan
PF00575 all species →	S1	S1 RNA binding domain	Domain	Interproscan
PF13513 all species →	HEAT_EZ	HEAT-like repeat	Repeat	Interproscan
PF07092 all species →	TMEM106	TM106 protein C-terminal domain	Domain	Interproscan
PF21002 all species →	TMEM106_N	Transmembrane protein 106 N-terminal region	Family	Interproscan
PF13976 all species →	gag_pre-integrs	GAG-pre-integrase domain	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR012162 all species →	Family	Polyribonucleotide nucleotidyltransferase	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR009790 all species →	Family	Transmembrane protein 106	Interproscan
IPR048509 all species →	Domain	Transmembrane protein 106, C-terminal domain	Interproscan
IPR048511 all species →	Domain	Transmembrane protein 106, N-terminal	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR025724 all species →	Domain	GAG-pre-integrase domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR002153 all species →	Family	Transient receptor potential channel, canonical	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR050230 all species →	Family	Calcium-Regulated Muscle Contraction and Cellular Process	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11252 all species →	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE	Interproscan
PTHR23346 all species →	TRANSLATIONAL ACTIVATOR GCN1-RELATED	Interproscan
PTHR28556 all species →	TRANSMEMBRANE PROTEIN 106B	Interproscan
PTHR42648 all species →	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR24188 all species →	ANKYRIN REPEAT PROTEIN	Interproscan
PTHR23048 all species →	MYOSIN LIGHT CHAIN 1, 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000958 all species →	Biological Process	mitochondrial mRNA catabolic process	Interproscan
GO:0000965 all species →	Biological Process	mitochondrial RNA 3'-end processing	Interproscan
GO:0004654 all species →	Molecular Function	polyribonucleotide nucleotidyltransferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0006402 all species →	Biological Process	mRNA catabolic process	Interproscan
GO:0006417 all species →	Biological Process	regulation of translation	Interproscan
GO:0019887 all species →	Molecular Function	protein kinase regulator activity	Interproscan
GO:0034198 all species →	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0005262 all species →	Molecular Function	calcium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0070588 all species →	Biological Process	calcium ion transmembrane transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016460 all species →	Cellular Component	myosin II complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04984	TRPA1, ANKTM1; transient receptor potential cation channel subfamily A member 1	-	Ion channels	ko04040	deepkoala
K12751	MYL6; myosin light chain 6	-	Exosome	ko04147	deepkoala
K25048	TMEM106B; transmembrane protein 106B	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.