Gene detail

Detailed information of g905.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_004206580.3, myb-like protein X [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q8TB37	Iron-sulfur cluster transfer protein NUBPL OS=Homo sapiens OX=9606 GN=NUBPL PE=1 SV=3
Q9CWD8	Iron-sulfur cluster transfer protein NUBPL OS=Mus musculus OX=10090 GN=Nubpl PE=1 SV=2
Q54F15	Iron-sulfur cluster transfer protein NUBPL OS=Dictyostelium discoideum OX=44689 GN=nubpl PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	DUB\|USP\|USP
Ubiquitin Family	UBD\|ZnF\|ZnF_UBP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08238	Sel1	Sel1 repeat	Repeat	Interproscan
PF02954	HTH_8	Bacterial regulatory protein, Fis family	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF11838	ERAP1_C	ERAP1-like C-terminal domain	Domain	Interproscan
PF03451	HELP	HELP motif	Repeat	Interproscan
PF17807	zf-UBP_var	Variant UBP zinc finger	Domain	Interproscan
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF02148	zf-UBP	Zn-finger in ubiquitin-hydrolases and other protein	Domain	Interproscan
PF00627	UBA	UBA/TS-N domain	Domain	Interproscan
PF10609	ParA	NUBPL iron-transfer P-loop NTPase	Family	Interproscan
PF00024	PAN_1	PAN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050767	Family	Sel1/AlgK	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR006597	Repeat	Sel1-like repeat	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR002197	Domain	DNA binding HTH domain, Fis-type	Interproscan
IPR036514	Homologous_superfamily	SGNH hydrolase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR024571	Domain	ERAP1-like C-terminal domain	Interproscan
IPR050344	Family	Peptidase M1 family aminopeptidases	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR003656	Domain	Zinc finger, BED-type	Interproscan
IPR003533	Domain	Doublecortin domain	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR036572	Homologous_superfamily	Doublecortin domain superfamily	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR050185	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR005108	Conserved_site	HELP motif	Interproscan
IPR041432	Domain	Ubiquitinyl hydrolase, variant UBP zinc finger	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR001607	Domain	Zinc finger, UBP-type	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019591	Family	Mrp/NBP35 ATP-binding protein	Interproscan
IPR033756	Family	Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR044304	Family	Iron-sulfur protein NUBPL-like	Interproscan
IPR003609	Domain	PAN/Apple domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11102	SEL-1-LIKE PROTEIN	Interproscan
PTHR46791	EXPRESSED PROTEIN	Interproscan
PTHR34407	EXPRESSED PROTEIN	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR11533	PROTEASE M1 ZINC METALLOPROTEASE	Interproscan
PTHR47501	TRANSPOSASE-RELATED	Interproscan
PTHR21646	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan
PTHR42961	IRON-SULFUR PROTEIN NUBPL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0036503	Biological Process	ERAD pathway	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0042277	Molecular Function	peptide binding	Interproscan
GO:0043171	Biological Process	peptide catabolic process	Interproscan
GO:0070006	Molecular Function	metalloaminopeptidase activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016226	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0140663	Molecular Function	ATP-dependent FeS chaperone activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0032981	Biological Process	mitochondrial respiratory chain complex I assembly	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14026	SEL1, SEL1L; SEL1 protein	-	Ubiquitin system	ko04121	deepkoala
			Mitochondrial biogenesis	ko03029	deepkoala
			Protein processing in endoplasmic reticulum	ko04141	deepkoala