Gene detail

Detailed information of g908.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047129956.1, BRCA2-interacting transcriptional repressor EMSY isoform X2 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86IA3	Protein disulfide-isomerase 1 OS=Dictyostelium discoideum OX=44689 GN=pdi1 PE=1 SV=2
Q7Z589	BRCA2-interacting transcriptional repressor EMSY OS=Homo sapiens OX=9606 GN=EMSY PE=1 SV=2
Q7ZUV7	BRCA2-interacting transcriptional repressor EMSY OS=Danio rerio OX=7955 GN=emsy PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000701 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001319 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001360 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004438 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005655 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0009922 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0013806 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0048989 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0059358 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00230 all species →	MIP	Major intrinsic protein	Family	Interproscan
PF03735 all species →	ENT	ENT domain	Family	Interproscan
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan
PF07521 all species →	RMMBL	Zn-dependent metallo-hydrolase RNA specificity domain	Motif	Interproscan
PF00412 all species →	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000425 all species →	Family	Major intrinsic protein	Interproscan
IPR034294 all species →	Family	Aquaporin transporter	Interproscan
IPR023271 all species →	Homologous_superfamily	Aquaporin-like	Interproscan
IPR022357 all species →	Conserved_site	Major intrinsic protein, conserved site	Interproscan
IPR005491 all species →	Domain	ENT domain	Interproscan
IPR033482 all species →	Family	BRCA2-interacting transcriptional repressor EMSY	Interproscan
IPR036356 all species →	Homologous_superfamily	Endoplasmic reticulum resident protein 29, C-terminal domain superfamily	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR036142 all species →	Homologous_superfamily	ENT domain-like superfamily	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR011108 all species →	Domain	Zn-dependent metallo-hydrolase, RNA specificity domain	Interproscan
IPR050698 all species →	Family	RNA Processing Metallo-Beta-Lactamase Domain-Containing Protein	Interproscan
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19139 all species →	AQUAPORIN TRANSPORTER	Interproscan
PTHR16500 all species →	BRCA2-INTERACTING TRANSCRIPTIONAL REPRESSOR EMSY	Interproscan
PTHR11203 all species →	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER	Interproscan
PTHR24215 all species →	RHO-GTPASE-ACTIVATING PROTEIN LRG1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015267 all species →	Molecular Function	channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006833 all species →	Biological Process	water transport	Interproscan
GO:0015250 all species →	Molecular Function	water channel activity	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016180 all species →	Biological Process	snRNA processing	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008307 all species →	Molecular Function	structural constituent of muscle	Interproscan
GO:0030018 all species →	Cellular Component	Z disc	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0042805 all species →	Molecular Function	actinin binding	Interproscan
GO:0045214 all species →	Biological Process	sarcomere organization	Interproscan
GO:0060537 all species →	Biological Process	muscle tissue development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09377	CSRP; cysteine and glycine-rich protein	-	Transcription factors	ko03000	deepkoala
K09866	AQP4; aquaporin-4	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →