Gene detail

Detailed information of g91.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_274218086.1, hypothetical protein [Pseudovibrio exalbescens]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G5EFJ9	Potassium voltage-gated channel unc-103 OS=Caenorhabditis elegans OX=6239 GN=unc-103 PE=1 SV=1
Q9H252	Voltage-gated inwardly rectifying potassium channel KCNH6 OS=Homo sapiens OX=9606 GN=KCNH6 PE=1 SV=2
O54853	Voltage-gated inwardly rectifying potassium channel KCNH6 OS=Rattus norvegicus OX=10116 GN=Kcnh6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only)
Orthogroup (gene family)	OG0000894 (this species only)
Orthogroup (gene family)	OG0001768 (this species only)
Orthogroup (gene family)	OG0003121 (this species only)
Orthogroup (gene family)	OG0006166 (this species only)
Orthogroup (gene family)	OG0007597 (this species only)
Orthogroup (gene family)	OG0009722 (this species only)
Orthogroup (gene family)	OG0017419 (this species only)
Orthogroup (gene family)	OG0018747 (this species only)
Orthogroup (gene family)	OG0022258 (this species only)
Orthogroup (gene family)	OG0023248 (this species only)
Orthogroup (gene family)	OG0027091 (this species only)
Orthogroup (gene family)	OG0170781 (this species only)
Orthogroup (gene family)	OG0173379 (this species only)
Orthogroup (gene family)	OG0174185 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08771 all species →	FRB_dom	FKBP12-rapamycin binding domain	Domain	Interproscan
PF00454 all species →	PI3_PI4_kinase	Phosphatidylinositol 3- and 4-kinase	Family	Interproscan
PF02260 all species →	FATC	FATC domain	Family	Interproscan
PF11865 all species →	DUF3385	Domain of unknown function (DUF3385)	Repeat	Interproscan
PF02259 all species →	FAT	FAT domain	Repeat	Interproscan
PF00467 all species →	KOW	KOW motif	Family	Interproscan
PF01777 all species →	Ribosomal_L27e	Ribosomal L27e protein family	Family	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF00027 all species →	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan
PF09789 all species →	CC149	Coiled-coil domain-containing protein 149-A	Coiled-coil	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036716 all species →	Homologous_superfamily	Pesticidal crystal protein, N-terminal domain superfamily	Interproscan
IPR009076 all species →	Domain	FKBP12-rapamycin binding domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR036738 all species →	Homologous_superfamily	FKBP12-rapamycin binding domain superfamily	Interproscan
IPR018936 all species →	Conserved_site	Phosphatidylinositol 3/4-kinase, conserved site	Interproscan
IPR003152 all species →	Domain	FATC domain	Interproscan
IPR026683 all species →	Domain	Serine/threonine-protein kinase TOR, catalytic domain	Interproscan
IPR000403 all species →	Domain	Phosphatidylinositol 3-/4-kinase, catalytic domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR014009 all species →	Domain	PIK-related kinase	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR036940 all species →	Homologous_superfamily	Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily	Interproscan
IPR024585 all species →	Domain	Serine/threonine-protein kinase mTOR domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR050517 all species →	Family	DNA Damage Response and Repair Kinase	Interproscan
IPR003151 all species →	Domain	PIK-related kinase, FAT	Interproscan
IPR038655 all species →	Homologous_superfamily	Large ribosomal subunit protein eL27 superfamily	Interproscan
IPR001141 all species →	Family	Large ribosomal subunit protein eL27	Interproscan
IPR008991 all species →	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR041991 all species →	Domain	Large ribosomal subunit protein eL27, KOW domain	Interproscan
IPR005824 all species →	Domain	KOW	Interproscan
IPR052497 all species →	Family	H2.0 Homeobox Transcription Factors	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR000047 all species →	Conserved_site	Helix-turn-helix motif	Interproscan
IPR050149 all species →	Family	Collagen superfamily	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR050818 all species →	Family	Voltage-gated potassium channel family H	Interproscan
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR003967 all species →	Family	Potassium channel, voltage-dependent, ERG	Interproscan
IPR003938 all species →	Family	Potassium channel, voltage-dependent, EAG/ELK/ERG	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR019179 all species →	Family	Coiled-coil domain-containing protein 149-A	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11139 all species →	ATAXIA TELANGIECTASIA MUTATED ATM -RELATED	Interproscan
PTHR10497 all species →	60S RIBOSOMAL PROTEIN L27	Interproscan
PTHR46808 all species →	H2.0-LIKE HOMEOBOX PROTEIN	Interproscan
PTHR24023 all species →	COLLAGEN ALPHA	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR10217 all species →	VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL	Interproscan
PTHR21682 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0090729 all species →	Molecular Function	toxin activity	Interproscan
GO:0044877 all species →	Molecular Function	protein-containing complex binding	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0016242 all species →	Biological Process	negative regulation of macroautophagy	Interproscan
GO:0031929 all species →	Biological Process	TOR signaling	Interproscan
GO:0031931 all species →	Cellular Component	TORC1 complex	Interproscan
GO:0031932 all species →	Cellular Component	TORC2 complex	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005242 all species →	Molecular Function	inward rectifier potassium channel activity	Interproscan
GO:0005249 all species →	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0042391 all species →	Biological Process	regulation of membrane potential	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0086011 all species →	Biological Process	membrane repolarization during action potential	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07203	MTOR, FRAP, TOR; serine/threonine-protein kinase mTOR	EC:2.7.11.1	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.