Detailed information of g912.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH3132575.1, unnamed protein product [Porites lobata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q10568Cleavage and polyadenylation specificity factor subunit 2 OS=Bos taurus OX=9913 GN=CPSF2 PE=1 SV=1
Q9P2I0Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens OX=9606 GN=CPSF2 PE=1 SV=2
O35218Cleavage and polyadenylation specificity factor subunit 2 OS=Mus musculus OX=10090 GN=Cpsf2 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|SH3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF00018SH3_1SH3 domainDomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF04882Peroxin-3Peroxin-3FamilyInterproscan
PF07521RMMBLZn-dependent metallo-hydrolase RNA specificity domainMotifInterproscan
PF10996Beta-CaspBeta-Casp domainDomainInterproscan
PF16661Lactamase_B_6Metallo-beta-lactamase superfamily domainDomainInterproscan
PF13299CPSF100_CCleavage and polyadenylation factor 2 C-terminalFamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047163FamilyApoptosis-stimulating of p53 protein 1/2Interproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR036028Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR001452DomainSH3 domainInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR050374FamilyRRT5/SRSF/Splicing Factor SRInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR006966FamilyPeroxin-3Interproscan
IPR036866Homologous_superfamilyRibonuclease Z/Hydroxyacylglutathione hydrolase-likeInterproscan
IPR011108DomainZn-dependent metallo-hydrolase, RNA specificity domainInterproscan
IPR035639DomainCPSF2, metallo-hydrolase domainInterproscan
IPR027075FamilyCleavage and polyadenylation specificity factor subunit 2Interproscan
IPR022712DomainBeta-Casp domainInterproscan
IPR001279DomainMetallo-beta-lactamaseInterproscan
IPR025069DomainCleavage and polyadenylation specificity factor 2, C-terminalInterproscan
IPR049916FamilyWD repeat-containing protein 7/72Interproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR051320FamilyViral Replication and Maturation PolyproteinInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24131APOPTOSIS-STIMULATING OF P53 PROTEINInterproscan
PTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINInterproscan
PTHR23511SYNAPTIC VESICLE GLYCOPROTEIN 2Interproscan
PTHR28080PEROXISOMAL BIOGENESIS FACTOR 3Interproscan
PTHR45922CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2Interproscan
PTHR44099RABCONNECTIN-3B, ISOFORM AInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR33064POL PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0002039Molecular Functionp53 bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0042981Biological Processregulation of apoptotic processInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005778Cellular Componentperoxisomal membraneInterproscan
GO:0007031Biological Processperoxisome organizationInterproscan
GO:0005779Cellular Componentobsolete integral component of peroxisomal membraneInterproscan
GO:0030674Molecular Functionprotein-macromolecule adaptor activityInterproscan
GO:0045046Biological Processprotein import into peroxisome membraneInterproscan
GO:0005847Cellular ComponentmRNA cleavage and polyadenylation specificity factor complexInterproscan
GO:0006378Biological Processobsolete mRNA polyadenylationInterproscan
GO:0006398Biological ProcessmRNA 3'-end processing by stem-loop binding and cleavageInterproscan
GO:0098789Biological Processobsolete pre-mRNA cleavage required for polyadenylationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14402CPSF2, CFT2; cleavage and polyadenylation specificity factor subunit 2-Messenger RNA biogenesisko03019deepkoala

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