Gene detail

Detailed information of g9139.t1 in Montipora capitata

Genomic Location: Sc0000235:47581...84429
NR annotation: XP_022800825.1, CCAAT/enhancer-binding protein zeta-like isoform X2 [Stylophora pistillata]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g9139.t1

atggcggacagtcaagcagaaaatgtgaaaagaaaacgaaaaggcattccaagagttatggacgatatctcgctagaagatgtcctcgcgctaggaggtgatgagaaggactttgagatggttaaggacatagatgtctctggtgactttgttactggtgaaggagactcagaaaagatagaaacgaatgagataatgtcatatatcaaagaacttggcttggacaaagttgcctttgaagagactggagtaaaggaaagtgctagtgaaaatgatggctcaagtcccctgtcagatgataaagaagttacaaagaacaatcaagtggggaaagagactaaaggcaaaagagagaaaaaactcaagtctaaagatgttacaaacacagcatcacatagaacccaggaaaagaaacacagtttgcagggcaggaaaagaggtgctccccacaagttgctgattacacctggtggactgtggtatgatctgattgcagaagaaaacactaccaacggttctcttgatcaagaagaaattgtccaacttcacaatgaggcagcaaaccttttgcagaacgaagttggcatttatgatgaaatgaaagctaaagataagtcatcagattctcagtggttaaagtcagttgtgcattcgggaacattgaaagacaaagtggctgctcttactgtccaagtacaggaatctacagtacatcggctaaaaactttggacatattgattgggatggctaagaaaaagggacgaagggagagcatcatggctgtggacatgttaaaagaactttggatgacttcactgttgccagccaatagaaagttgcgtacatttagtcagcatcccttgatgactttgaatgaagttatccacaacggtggtggctgggatgaacgagataggcgacttatcctctggcacttcgaggaattgttaaaacaaagatacaaggagtttatcggcgttgtagagaatcttcttcatgacactttggttcacatcagaagtaagattttaggaacaatttttgatttactaagcgagaaaccagagcaggagcaagttctgctgagtttacttgtcaacaagattggggatcctgacaagaaagttgcatctaaagcagttgatctgttgagacgcttagtcatcaaacatcctaacatgaagctagtaataacgaaagaaatggaaaagcttctgtacagaccaaacgtagccatgaaggctcaatattatgcgatttgttttcttaatcagttgatcctgggtaaacgtgatcaagatcttgccaccaggctaatttccatctatttttccttcttcagggcattcttaaagaaaggggacatggaagcaaaattgctaagtgctcttctgacaggtgttaacagagcctttccttatgctaaagaagatgacgaacaatataatgaacaaatcaatactctgtttcggaccgtgcacattggttatttcagcacaagtgtgcaggctcttatgttgttgtttcaagtcatggagtccaggcagtccgtgtcagatcgtttttatcaggctctttatgccaaacttctggatccgactttaaaagcgtcttccaaacaggctttattcctaaatgttttgtataagtctttaaaagctgatccatcactacatcgtgtcaaggatgatgatgacgaggaacatttcgtagacgcgccctcagatgaggataattattctgacaagaacaataacgcgaccagtgaccataaacaacaaggaaaccacaccgacacgacggagatcgcacagaaagagcataaactgaatcagacaggaccaaaccgtttgtataagcctcagcagagaaatccgctgtatagcggggcagaaaattcctgctcatgggaacttaaccgactgtgtagacattatcatccgtcagtggtcgtttttgctactactctaatgaagggagattttatagagtacaatggggaccctttacaggacttcactcttatgagatcatggaggctcattaatgcagccgaaaacgttgtcaagtcgattagccgagcagcctggtatgagtacatctcattgaataccgaagcatttttagtgaagaaagaggaggacatccgggaagacgaagtctttttccacaggtatttcaaacgaaaggcagagacagaaaagcgacggaagaaaaaaacaagtgaatctgacgatgaaaattccgaaaatataccaaattatgataacatgcaagagcgttccagcacagacttcgattttgccagtgaattaaagagctccagacgcagttcatcaggtaaaaacaaacctagtgacagcgaagaagatgaggaaggtgatgacgaagaagagagtgaggaacaaagcaacagcgaaggtgaaaacaaggagcaatcttcctctgaagatgagttcgactatgaagccatggatttttcttctgctgaggaggacgagatggaggaaccaagtagtgcccagggcaagaaaaggaaattcaccgacaaagactacgagaaggctcttcttgaaaatttaagctcggatgaattttccgaagaagacactccaaggtcaaagaggaaatccaagaaaggaaaagttgagggatccagcgtttcgtcagtgtttgcctccgcagaagagtttgctcatctgttagagaattccgaagcgtctcgcggtgggcaatatgaagtcaggagagcaggagccagtgacaagcagcttaaatgggaagagaaaagggcgggaaaaaagtggaaagtagagcatggctcaggaaggggtggaaggaagggcccacagagaacatttaattatagttcgagaggcaaagtaaactccaagggaagaggcaaaaagaggaaaagataa

Transcript

g9139.t1

atggcggacagtCAAGCAGAAAATgtgaaaagaaaacgaaaaggCATTCCAAGAGTTATGGACGATATCTCGCTAGAAGATGTCCTCGCGCTAGGAGGTGATGAGAAGGACTTTGAGATGGTTAAGGACATAGATGTCTCTGGTGACTTTGTTACTGGTGAAGGAGACTCAGAAAAGATAGAAACGAATGAGATAATGTCATATATCAAAGAACTTGGCTTGGACAAAGTTGCCTTTGAAGAGACTGGAGTAAAGGAAAGTGCTAGTGAAAATGATGGCTCAAGTCCCCTGTCAGATGATAAAGAAGTTACAAAGAACAATCAAGTGGGGAAAGAGACTAAAggcaaaagagagaaaaaactcaaGTCTAAAGATGTTACAAACACAGCATCACATAGAACCCAGGAAAAGAAACACAGTTTGCAGGGCAGGAAAAGAGGTGCTCCCCACAAGTTGCTGATTACACCTGGTGGACTGTGGTATGATCTGATTGCAGAAGAAAACACTACCAACGGTTCTCTTGATCAAGAAGAAATTGTCCAACTTCACAATGAGGCAGCAAACCTTTTGCAGAACGAAGTTGGCATTTATGATGAAATGAAAGCTAAAGATAAGTCATCAGATTCTCAGTGGTTAAAGTCAGTTGTGCATTCGGGAACATTGAAAGACAAAGTGGCTGCTCTTACTGTCCAAGTACAGGAATCTACAGTACATCGGCTAAAAACTTTGGACATATTGATTGGGATGGCTAAGAAAAAGGGACGAAGGGAGAGCATCATGGCTGTGGACATGTTAAAAGAACTTTGGATGACTTCACTGTTGCCAGCCAATAGAAAGTTGCGTACATTTAGTCAGCATCCCTTGATGACTTTGAATGAAGTTATCCACAACGGTGGTGGCTGGGATGAACGAGATAGGCGACTTATCCTCTGGCACTTCGAGGAATTGTTAAAACAAAGATACAAGGAGTTTATCGGCGTTGTAGAGAATCTTCTTCATGACACTTTGGTTCACATCAGAAGTAAGATTTTAGGAACAATTTTTGATTTACTAAGCGAGAAACCAGAGCAGGAGCAAGTTCTGCTGAGTTTACTTGTCAACAAGATTGGGGATCCTGACAAGAAAGTTGCATCTAAAGCAGTTGATCTGTTGAGACGCTTAGTCATCAAACATCCTAACATGAAGCTAGTAATAACgaaagaaatggaaaagcttCTGTACAGACCAAACGTAGCCATGAAGGCTCAaTATTATGCGATTTGTTTTCTTAATCAGTTGATCCTGGGTAAACGTGATCAAGATCTTGCCACCAGGCTAATTTCCATCTATTTTTCCTTCTTCAGGGCATTCTTAAAGAAAGGGGACATGGAAGCAAAATTGCTAAGTGCTCTTCTGACAGGTGTTAACAGAGCCTTTCCTTATGCTAAAGAAGATGACGAACAATATAATGAACAAATCAATACTCTGTTTCGGACCGTGCACATTGGTTATTTCAGCACAAGTGTGCAGGCTCTTATGTTGTTGTTTCAAGTCATGGAGTCCAGGCAGTCCGTGTCAGATCGTTTTTATCAGGCTCTTTATGCCAAACTTCTGGATCCGACTTTAAAAGCGTCTTCCAAACAGGCTTTATTCCTAAATGTTTTGTATAAGTCTTTAAAAGCTGATCCATCACTACATCGTGTCAAGGATGATGATGACGAGGAACATTTCGTAGACGCGCCCTCAGATGAGGATAATTATTCTGACAAGAACAATAACGCGACCAGTGACCATAAACAACAAGGAAACCACACCGACACGACGGAGATCGCACAGAAAGAGCATAAACTGAATCAGACAGGACCAAACCGTTTGTATAAGCCTCAGCAGAGAAATCCGCTGTATAGCGGGGCAGAAAATTCCTGCTCATGGGAACTTAACCGACTGTGTAGACATTATCATCCGTCAGTGGTCGTTTTTGCTACTACTCTAATGAAGGGAGATTTTATAGAGTACAATGGGGACCCTTTACAGGACTTCACTCTTAtgagATCATGGAGGCTCATTAATGCAGCCGAAAACGTTGTCAAGTCGATTAGCCGAGCAGCCTGGTATGAGTACATCTCATTGAATACCGAAGCATTTTTAGTGAAGAAAGAGGAGGACATCCGGGAAGACGAAGTCTTTTTCCACAGGTATTTCAAACGAAAGGCAGAGACAGAAAAGcgacggaagaaaaaaacaagtgaATCTGACGATGAAAATTCCGAAAATATACCAAATTATGATAACATGCAAGAGCGTTCCAGCACAGACTTCGATTTTGCCAGTGAATTAAAGAGCTCCAGACGCAGTTCATCAGGTAAAAACAAACCTAGTGACAGCGAAGAAGATGAGGAAGGTGATGACGAAGAAGAGAGTGAGGAACAAAGCAACAGCGAAGGTGAAAACAAGGAGCAATCTTCCTCTGAAGATGAGTTCGACTATGAAGCCATGGATTTTTCTTCTGCTGAGGAGGACGAGATGGAGGAACCAAGTAGTGCCCAGGGCAAGAAAAGGAAATTCACCGACAAAGACTACGAGAAGGCTCTTCTTGAAAATTTAAGCTCGGATGAATTTTCCGAAGAAGACACTCCAAGGTCAAAGAGGAAATCcaagaaaggaaaagttgaGGGATCCAGCGTTTCGTCAGTGTTTGCCTCCGCAGAAGAGTTTGCTCATCTGTTAGAGAATTCCGAAGCGTCTCGCGGTGGGCAATATGAAGTCAGGAGAGCAGGAGCCAGTGACAAGCAGCTTAAATGGGAAGAGAAAAGGGCGGGAAAAAAGTGGAAAGTAGAGCATGGCTCAGGAAGGGGTGGAAGGAAGGGCCCAcagagaacatttaattatagTTCGAGAGGCAAAGTAAACTCCAAGGGAAGAggcaaaaagaggaaaagataA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P53569	CCAAT/enhancer-binding protein zeta OS=Mus musculus OX=10090 GN=Cebpz PE=1 SV=2
Q03701	CCAAT/enhancer-binding protein zeta OS=Homo sapiens OX=9606 GN=CEBPZ PE=1 SV=3
O36021	Uncharacterized protein C4F10.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC4F10.09c PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004145 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03914 all species →	CBF	CBF/Mak21 family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR005612 all species →	Domain	CCAAT-binding factor	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR040155 all species →	Family	CEBPZ/Mak21-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12048 all species →	CCAAT-BINDING FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14832	MAK21, NOC1, CEBPZ; ribosome biogenesis protein MAK21	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g9139.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

27.1Max TPM

14.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	14.96	26.27
whole organisms · low pH treatment	15	15	13.64	27.13
whole organisms · extra low pH treatment pH treatment	12	12	13.39	23.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	26.27
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	24.58
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	24.57
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	23.58
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	22.63
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	20.80
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	17.67
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	16.80
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	16.56
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	16.20
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	14.24
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	12.62
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	12.44
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	11.50
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	10.58
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	8.91
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	8.26
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	7.03
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	6.97
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	6.61
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	5.36
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	27.13
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	26.94
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	25.05
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	15.41
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	14.21
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	12.93
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	12.78
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	11.49
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	10.09
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	9.67
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	9.48
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	9.03
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	8.52
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	6.15
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	5.73
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	23.56
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	20.38
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	18.89
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	18.71
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	13.97
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	13.55
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	12.40
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	10.79
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	9.51
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	8.95
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	5.40
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	4.57

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.