Detailed information of g914.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_020620700.1, protein lin-9 homolog isoform X2 [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q5TKA1Protein lin-9 homolog OS=Homo sapiens OX=9606 GN=LIN9 PE=1 SV=1
Q4R8N2Protein lin-9 homolog OS=Macaca fascicularis OX=9541 GN=LIN9 PE=2 SV=1
Q8C735Protein lin-9 homolog OS=Mus musculus OX=10090 GN=Lin9 PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyUBD|Alpha-Helix|UBA

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06584DIRPDIRPFamilyInterproscan
PF19438LIN9_CLIN9 C-terminalDomainInterproscan
PF15370NOPCHAP1NOP protein chaperone 1FamilyInterproscan
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF00704Glyco_hydro_18Glycosyl hydrolases family 18DomainInterproscan
PF00627UBAUBA/TS-N domainDomainInterproscan
PF00149MetallophosCalcineurin-like phosphoesteraseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR033471DomainDIRP domainInterproscan
IPR045831DomainLIN-9, C-terminalInterproscan
IPR010561FamilyProtein LIN-9/Protein ALWAYS EARLYInterproscan
IPR027921FamilyNOP protein chaperone 1Interproscan
IPR040676DomainDomain of unknown function DUF5641Interproscan
IPR001223DomainGlycoside hydrolase family 18, catalytic domainInterproscan
IPR001579Active_siteGlycosyl hydrolases family 18 (GH18) active siteInterproscan
IPR050542FamilyGlycosyl Hydrolase 18 Family ChitinasesInterproscan
IPR017853Homologous_superfamilyGlycoside hydrolase superfamilyInterproscan
IPR036859Homologous_superfamilyCAP Gly-rich domain superfamilyInterproscan
IPR000938DomainCAP Gly-rich domainInterproscan
IPR015496FamilyUbiquilinInterproscan
IPR015940DomainUbiquitin-associated domainInterproscan
IPR009060Homologous_superfamilyUBA-like superfamilyInterproscan
IPR006636DomainHeat shock chaperonin-bindingInterproscan
IPR047129FamilySerine/Threonine protein phosphatase PP2A-likeInterproscan
IPR004843DomainCalcineurin-like phosphoesterase domain, ApaH typeInterproscan
IPR029052Homologous_superfamilyMetallo-dependent phosphatase-likeInterproscan
IPR006186DomainSerine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphataseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21689LIN-9Interproscan
PTHR28674SIMILAR TO DNA SEGMENT, CHR 10, WAYNE STATE UNIVERSITY 102,-EXPRESSEDInterproscan
PTHR45708ENDOCHITINASEInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR10677UBIQUILINInterproscan
PTHR45619SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATEDInterproscan
PTHR46880RAS-ASSOCIATING DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000003Biological Processobsolete reproductionInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005654Cellular ComponentnucleoplasmInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0017053Cellular Componenttranscription repressor complexInterproscan
GO:0051726Biological Processregulation of cell cycleInterproscan
GO:0000492Biological Processbox C/D snoRNP assemblyInterproscan
GO:0062064Molecular Functionbox C/D methylation guide snoRNP complex bindingInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compoundsInterproscan
GO:0004568Molecular Functionchitinase activityInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0031593Molecular Functionpolyubiquitin modification-dependent protein bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000724Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0004722Molecular Functionprotein serine/threonine phosphatase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15423PPP4C; serine/threonine-protein phosphatase 4 catalytic subunitEC:3.1.3.16
Cellular senescenceko04218deepkoala
Proteasomeko03051deepkoala
DNA repair and recombination proteinsko03400deepkoala

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