Detailed information of g915.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH1269105.1, PSMB8 [Branchiostoma lanceolatum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P28075Proteasome subunit beta type-5 OS=Rattus norvegicus OX=10116 GN=Psmb5 PE=1 SV=3
O55234Proteasome subunit beta type-5 OS=Mus musculus OX=10090 GN=Psmb5 PE=1 SV=3
P28074Proteasome subunit beta type-5 OS=Homo sapiens OX=9606 GN=PSMB5 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00892EamAEamA-like transporter familyFamilyInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF02141DENNDENN (AEX-3) domainFamilyInterproscan
PF10431ClpB_D2-smallC-terminal, D2-small domain, of ClpB protein DomainInterproscan
PF07724AAA_2AAA domain (Cdc48 subfamily)DomainInterproscan
PF00227ProteasomeProteasome subunitDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF10145PhageMin_TailPhage-related minor tail proteinFamilyInterproscan
PF06367Drf_FH3Diaphanous FH3 DomainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000620DomainEamA domainInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR051276FamilySaccharopine dehydrogenase-like oxidoreductaseInterproscan
IPR001194DomaincDENN domainInterproscan
IPR043153Homologous_superfamilyDENN domain, C-terminal lobeInterproscan
IPR024224FamilyDENND6Interproscan
IPR037516DomainTripartite DENN domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR050052FamilyATP-dependent Clp protease ATP-binding subunit ClpXInterproscan
IPR019489DomainClp ATPase, C-terminalInterproscan
IPR010603DomainZinc finger, ClpX C4-typeInterproscan
IPR003959DomainATPase, AAA-type, coreInterproscan
IPR029055Homologous_superfamilyNucleophile aminohydrolases, N-terminalInterproscan
IPR023333FamilyProteasome B-type subunitInterproscan
IPR016050Conserved_siteProteasome beta-type subunit, conserved siteInterproscan
IPR000243FamilyPeptidase T1A, proteasome beta-subunitInterproscan
IPR001353FamilyProteasome, subunit alpha/betaInterproscan
IPR014014DomainRNA helicase, DEAD-box type, Q motifInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR010090DomainPhage tail tape measure proteinInterproscan
IPR010472DomainFormin, FH3 domainInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR043592FamilyFormin-like protein, animalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22911ACYL-MALONYL CONDENSING ENZYME-RELATEDInterproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan
PTHR12286UNCHARACTERIZEDInterproscan
PTHR13677UNCHARACTERIZEDInterproscan
PTHR48102ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATEDInterproscan
PTHR32194METALLOPROTEASE TLDDInterproscan
PTHR47958ATP-DEPENDENT RNA HELICASE DBP3Interproscan
PTHR45857FORMIN-LIKE PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016021Cellular ComponentmembraneInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0055037Cellular Componentrecycling endosomeInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005759Cellular Componentmitochondrial matrixInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0051603Biological Processproteolysis involved in protein catabolic processInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0005839Cellular Componentproteasome core complexInterproscan
GO:0004298Molecular Functionthreonine-type endopeptidase activityInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0010494Cellular Componentcytoplasmic stress granuleInterproscan
GO:0016973Biological Processpoly(A)+ mRNA export from nucleusInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003779Molecular Functionactin bindingInterproscan
GO:0016043Biological Processcellular component organizationInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0007010Biological Processcytoskeleton organizationInterproscan
GO:0008360Biological Processregulation of cell shapeInterproscan
GO:0016477Biological Processcell migrationInterproscan
GO:0022604Biological Processregulation of cell morphogenesisInterproscan
GO:0030866Biological Processcortical actin cytoskeleton organizationInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03544clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX-Proteasomeko03051deepkoala
Chaperones and folding catalystsko03110deepkoala

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