Detailed information of g918.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_001629084.1, 116 kDa U5 small nuclear ribonucleoprotein component isoform X2 [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O08810116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus OX=10090 GN=Eftud2 PE=1 SV=1
Q5F3X4116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus OX=9031 GN=EFTUD2 PE=2 SV=1
Q15029116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens OX=9606 GN=EFTUD2 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyTF_bZIP
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10266StrumpellinHereditary spastic paraplegia protein strumpellinFamilyInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan
PF21040CEP104-like_TOGCentrosomal protein CEP104-like, TOG domainRepeatInterproscan
PF02219MTHFRMethylenetetrahydrofolate reductaseDomainInterproscan
PF00188CAPCysteine-rich secretory protein familyDomainInterproscan
PF00294PfkBpfkB family carbohydrate kinaseDomainInterproscan
PF04227Indigoidine_AIndigoidine synthase A like proteinFamilyInterproscan
PF04511DER1Der1-like familyFamilyInterproscan
PF07716bZIP_2Basic region leucine zipperCoiled-coilInterproscan
PF00009GTP_EFTUElongation factor Tu GTP binding domainDomainInterproscan
PF16004EFTUD2116 kDa U5 small nuclear ribonucleoprotein component N-terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019393FamilyWASH complex, subunit strumpellinInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR007527DomainZinc finger, SWIM-typeInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR008271Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR050538FamilyMitogen-activated protein kinase kinase kinaseInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR017441Binding_siteProtein kinase, ATP binding siteInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR004621FamilyEukaryotic-type methylenetetrahydrofolate reductaseInterproscan
IPR029041Homologous_superfamilyFAD-linked oxidoreductase-likeInterproscan
IPR003171FamilyMethylenetetrahydrofolate reductase-likeInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR001283FamilyCysteine-rich secretory protein-relatedInterproscan
IPR018244Conserved_siteAllergen V5/Tpx-1-related, conserved siteInterproscan
IPR036444Homologous_superfamilyPhospholipase A2 domain superfamilyInterproscan
IPR035940Homologous_superfamilyCAP superfamilyInterproscan
IPR034113DomainGolgi-associated plant pathogenesis-related protein 1, SCP domainInterproscan
IPR014044DomainCAP domainInterproscan
IPR022830Homologous_superfamilyIndigoidine synthase A-likeInterproscan
IPR029056Homologous_superfamilyRibokinase-likeInterproscan
IPR002173Conserved_siteCarbohydrate/purine kinase, PfkB, conserved siteInterproscan
IPR011611DomainCarbohydrate kinase PfkBInterproscan
IPR007342FamilyPseudouridine-5'-phosphate glycosidaseInterproscan
IPR035952Homologous_superfamilyRhomboid-like superfamilyInterproscan
IPR007599FamilyDerlinInterproscan
IPR046347Homologous_superfamilyBasic-leucine zipper domain superfamilyInterproscan
IPR004827DomainBasic-leucine zipper domainInterproscan
IPR031106FamilyCCAAT/enhancer-binding protein C/EBPInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000795DomainTranslational (tr)-type GTP-binding domainInterproscan
IPR031950Domain116kDa U5 small nuclear ribonucleoprotein component, N-terminalInterproscan
IPR008116FamilySequence-specific single-strand DNA-binding proteinInterproscan
IPR006594Conserved_siteLIS1 homology motifInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15691WASH COMPLEX SUBUNIT 5Interproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR48016MAP KINASE KINASE KINASE SSK2-RELATED-RELATEDInterproscan
PTHR45754METHYLENETETRAHYDROFOLATE REDUCTASEInterproscan
PTHR10334CYSTEINE-RICH SECRETORY PROTEIN-RELATEDInterproscan
PTHR42909ZGC:136858Interproscan
PTHR44464WD REPEAT-CONTAINING PROTEIN 17Interproscan
PTHR11009DER1-LIKE PROTEIN, DERLINInterproscan
PTHR23334CCAAT/ENHANCER BINDING PROTEINInterproscan
PTHR42908TRANSLATION ELONGATION FACTOR-RELATEDInterproscan
PTHR12610SINGLE STRANDED DNA BINDING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005768Cellular ComponentendosomeInterproscan
GO:0007032Biological Processendosome organizationInterproscan
GO:0030041Biological Processactin filament polymerizationInterproscan
GO:0051125Biological Processregulation of actin nucleationInterproscan
GO:0071203Cellular ComponentWASH complexInterproscan
GO:0140285Biological Processendosome fissionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0004489Molecular Functionmethylenetetrahydrofolate reductase (NAD(P)H) activityInterproscan
GO:0006555Biological Processmethionine metabolic processInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0009086Biological Processmethionine biosynthetic processInterproscan
GO:0035999Biological Processtetrahydrofolate interconversionInterproscan
GO:0071949Molecular FunctionFAD bindingInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0004623Molecular Functionphospholipase A2 activityInterproscan
GO:0006644Biological Processphospholipid metabolic processInterproscan
GO:0050482Biological Processarachidonate secretionInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0004730Molecular Functionpseudouridylate synthase activityInterproscan
GO:0016301Molecular Functionkinase activityInterproscan
GO:0000839Cellular ComponentHrd1p ubiquitin ligase ERAD-L complexInterproscan
GO:0030176Cellular Componentobsolete integral component of endoplasmic reticulum membraneInterproscan
GO:0030433Biological Processobsolete ubiquitin-dependent ERAD pathwayInterproscan
GO:0030968Biological Processendoplasmic reticulum unfolded protein responseInterproscan
GO:0051787Molecular Functionmisfolded protein bindingInterproscan
GO:1990381Molecular Functionubiquitin-specific protease bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0030623Molecular FunctionU5 snRNA bindingInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071007Cellular ComponentU2-type catalytic step 2 spliceosomeInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04416MAP3K1, MEKK1; mitogen-activated protein kinase kinase kinase 1EC:2.7.11.25
Antifolate resistanceko01523deepkoala
Ubiquitin systemko04121deepkoala

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