Gene detail

Detailed information of g92.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047127289.1, uncharacterized protein LOC124808373 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9Z1V5	von Willebrand factor A domain-containing protein 5B1 OS=Mus musculus OX=10090 GN=Vwa5b1 PE=2 SV=1
Q5TIE3	von Willebrand factor A domain-containing protein 5B1 OS=Homo sapiens OX=9606 GN=VWA5B1 PE=1 SV=2
Q54DU5	von Willebrand factor A domain-containing protein DDB_G0292028 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0292028 PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000477 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000966 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001067 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001326 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003341 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006275 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006387 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006873 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007002 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0012037 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0016395 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0049960 (this species only) · gene tree & orthology
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08473 all species →	VGCC_alpha2	Neuronal voltage-dependent calcium channel alpha 2acd	Family	Interproscan
PF00025 all species →	Arf	ADP-ribosylation factor family	Domain	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF05769 all species →	SIKE	SIKE family	Family	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF02733 all species →	Dak1	Dak1 domain	Family	Interproscan
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan
PF13532 all species →	2OG-FeII_Oxy_2	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan
PF07985 all species →	SRR1	SRR1 domain	Domain	Interproscan
PF13768 all species →	VWA_3	von Willebrand factor type A domain	Domain	Interproscan
PF13757 all species →	VIT_2	Vault protein inter-alpha-trypsin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013680 all species →	Domain	Voltage-dependent calcium channel, alpha-2/delta subunit, conserved region	Interproscan
IPR051173 all species →	Family	Voltage-dependent calcium channel subunit alpha-2/delta	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006689 all species →	Family	Small GTPase superfamily, ARF/SAR type	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR039588 all species →	Family	F-box only protein 4	Interproscan
IPR008555 all species →	Family	SIKE family	Interproscan
IPR036859 all species →	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR050861 all species →	Family	Dihydroxyacetone Kinase (DAK)	Interproscan
IPR004006 all species →	Domain	DhaK domain	Interproscan
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR050567 all species →	Family	Mitochondrial Carrier	Interproscan
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR005123 all species →	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR037151 all species →	Homologous_superfamily	Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily	Interproscan
IPR004574 all species →	Family	Alkylated DNA repair protein AlkB	Interproscan
IPR027450 all species →	Domain	Alpha-ketoglutarate-dependent dioxygenase AlkB-like	Interproscan
IPR040044 all species →	Family	SRR1-like protein	Interproscan
IPR012942 all species →	Domain	SRR1-like domain	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR013694 all species →	Domain	VIT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10166 all species →	VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED	Interproscan
PTHR16008 all species →	F-BOX ONLY PROTEIN 4	Interproscan
PTHR47331 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR11830 all species →	40S RIBOSOMAL PROTEIN S3A	Interproscan
PTHR28629 all species →	TRIOKINASE/FMN CYCLASE	Interproscan
PTHR45624 all species →	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	Interproscan
PTHR16557 all species →	ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED	Interproscan
PTHR28626 all species →	SRR1-LIKE PROTEIN	Interproscan
PTHR45737 all species →	VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005245 all species →	Molecular Function	voltage-gated calcium channel activity	Interproscan
GO:0005891 all species →	Cellular Component	voltage-gated calcium channel complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0061578 all species →	Molecular Function	K63-linked deubiquitinase activity	Interproscan
GO:0070536 all species →	Biological Process	protein K63-linked deubiquitination	Interproscan
GO:0004371 all species →	Molecular Function	glycerone kinase activity	Interproscan
GO:0019563 all species →	Biological Process	glycerol catabolic process	Interproscan
GO:0006071 all species →	Biological Process	glycerol metabolic process	Interproscan
GO:0005289 all species →	Molecular Function	high-affinity L-arginine transmembrane transporter activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:1990575 all species →	Biological Process	mitochondrial L-ornithine transmembrane transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008198 all species →	Molecular Function	ferrous iron binding	Interproscan
GO:0035513 all species →	Biological Process	oxidative RNA demethylation	Interproscan
GO:0035515 all species →	Molecular Function	oxidative RNA demethylase activity	Interproscan
GO:0035516 all species →	Molecular Function	broad specificity oxidative DNA demethylase activity	Interproscan
GO:0035552 all species →	Biological Process	obsolete oxidative single-stranded DNA demethylation	Interproscan
GO:0007017 all species →	Biological Process	microtubule-based process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08601	CYLD, USLP2; ubiquitin carboxyl-terminal hydrolase CYLD	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala
K10291	FBXO4; F-box protein 4	-	Ubiquitin system	ko04121	deepkoala
K10765	ALKBH1; alkylated DNA repair protein alkB homolog 1	EC:1.14.11.51 EC:4.2.99.18 EC:1.14.11.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.