Detailed information of g93.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_274218083.1, sigma-70 family RNA polymerase sigma factor [Pseudovibrio exalbescens]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O15995G1/S-specific cyclin-E OS=Hemicentrotus pulcherrimus OX=7650 GN=CYCE PE=2 SV=1
P39949G1/S-specific cyclin-E1 OS=Rattus norvegicus OX=10116 GN=Ccne1 PE=1 SV=2
P49707G1/S-specific cyclin-E1 OS=Gallus gallus OX=9031 GN=CCNE1 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14924DUF4497Protein of unknown function (DUF4497)FamilyInterproscan
PF04502Saf4_Yju2Saf4/Yju2 protein FamilyInterproscan
PF00134Cyclin_NCyclin, N-terminal domainDomainInterproscan
PF02984Cyclin_CCyclin, C-terminal domainDomainInterproscan
PF20519Polycystin_domPolycystin domainDomainInterproscan
PF01477PLATPLAT/LH2 domainDomainInterproscan
PF08016PKD_channelPolycystin cation channelFamilyInterproscan
PF12017Tnp_P_elementTransposable element P transposase-like, HTH domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR039302FamilyMicrotubule associated protein 10Interproscan
IPR007590FamilySaf4/Yju2 proteinInterproscan
IPR004367DomainCyclin, C-terminal domainInterproscan
IPR039361FamilyCyclinInterproscan
IPR036915Homologous_superfamilyCyclin-like superfamilyInterproscan
IPR013763DomainCyclin-like domainInterproscan
IPR006671DomainCyclin, N-terminalInterproscan
IPR051223FamilyPolycystinInterproscan
IPR046791DomainPolycystin domainInterproscan
IPR001024DomainPLAT/LH2 domainInterproscan
IPR003915FamilyPolycystic kidney disease type 2 proteinInterproscan
IPR013122DomainPolycystin cation channel, PKD1/PKD2Interproscan
IPR036392Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan
IPR021896DomainTHAP9-like, helix-turn-helix domainInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21831UNCHARACTERIZEDInterproscan
PTHR12111SPLICING FACTOR YJU2Interproscan
PTHR10177CYCLINSInterproscan
PTHR10877POLYCYSTIN FAMILY MEMBERInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000226Biological Processmicrotubule cytoskeleton organizationInterproscan
GO:0005813Cellular ComponentcentrosomeInterproscan
GO:0005881Cellular Componentcytoplasmic microtubuleInterproscan
GO:0008017Molecular Functionmicrotubule bindingInterproscan
GO:0030496Cellular ComponentmidbodyInterproscan
GO:0031122Biological Processcytoplasmic microtubule organizationInterproscan
GO:0032467Biological Processpositive regulation of cytokinesisInterproscan
GO:0051256Biological Processmitotic spindle midzone assemblyInterproscan
GO:0097431Cellular Componentmitotic spindle poleInterproscan
GO:1990023Cellular Componentmitotic spindle midzoneInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005684Cellular ComponentU2-type spliceosomal complexInterproscan
GO:0008380Biological ProcessRNA splicingInterproscan
GO:0071014Cellular Componentpost-mRNA release spliceosomal complexInterproscan
GO:0000079Biological Processregulation of cyclin-dependent protein serine/threonine kinase activityInterproscan
GO:0000082Biological ProcessG1/S transition of mitotic cell cycleInterproscan
GO:0000307Cellular Componentcyclin-dependent protein kinase holoenzyme complexInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0016538Molecular Functioncyclin-dependent protein serine/threonine kinase regulator activityInterproscan
GO:0044772Biological Processmitotic cell cycle phase transitionInterproscan
GO:0097134Cellular Componentcyclin E1-CDK2 complexInterproscan
GO:0005262Molecular Functioncalcium channel activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0050982Biological Processdetection of mechanical stimulusInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04988PKD1L2; polycystin 1L2-Chromosome and associated proteinsko03036deepkoala
Spliceosomeko03041deepkoala
Ion channelsko04040deepkoala

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