Detailed information of g934.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCP3664820.1, DDE-type integrase/transposase/recombinase [Gammaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Q9ZT94Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1
Q94HW2Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|SH3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF14604SH3_9Variant SH3 domainDomainInterproscan
PF01398JABJAB1/Mov34/MPN/PAD-1 ubiquitin proteaseFamilyInterproscan
PF19445eIF3h_CC-terminal region of eIF3hFamilyInterproscan
PF07818HCNGPHCNGP-like proteinFamilyInterproscan
PF00536SAM_1SAM domain (Sterile alpha motif)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR050384FamilyEndophilin/SH3RFInterproscan
IPR001452DomainSH3 domainInterproscan
IPR036028Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR027524FamilyEukaryotic translation initiation factor 3 subunit HInterproscan
IPR000555DomainJAB1/MPN/MOV34 metalloenzyme domainInterproscan
IPR050242FamilyJAMM/MPN+ metalloenzymes, peptidase M67AInterproscan
IPR045810DomaineIF3h, C-terminalInterproscan
IPR037518DomainMPN domainInterproscan
IPR012479FamilySAP30-binding proteinInterproscan
IPR001660DomainSterile alpha motif domainInterproscan
IPR013761Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR050548FamilyPolycomb group and chromatin remodeling factorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR14167SH3 DOMAIN-CONTAININGInterproscan
PTHR10410EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATEDInterproscan
PTHR13464TRANSCRIPTIONAL REGULATOR PROTEIN HCNGPInterproscan
PTHR12247POLYCOMB GROUP PROTEINInterproscan
PTHR22955RETROTRANSPOSONInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003743Molecular Functiontranslation initiation factor activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005852Cellular Componenteukaryotic translation initiation factor 3 complexInterproscan
GO:0008233Molecular Functionpeptidase activityInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0016282Cellular Componenteukaryotic 43S preinitiation complexInterproscan
GO:0042788Cellular Componentobsolete polysomal ribosomeInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0005634Cellular ComponentnucleusInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K26267SAP30BP; SAP30-binding protein-Exosomeko04147deepkoala
Chromosome and associated proteinsko03036deepkoala

TOP