Gene detail

Detailed information of g9366.t1 in Acropora digitifera

Genomic Location: chr4Alt:23695887...23697524
NR annotation: XP_015763796.1, PREDICTED: transcription factor HES-2-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90Z12	Transcription factor HES-4-A OS=Xenopus laevis OX=8355 GN=hes4-a PE=1 SV=2
Q9HCC6	Transcription factor HES-4 OS=Homo sapiens OX=9606 GN=HES4 PE=1 SV=1
Q3ZBG4	Transcription factor HES-1 OS=Bos taurus OX=9913 GN=HES1 PE=2 SV=1

Gene family

Family type	Membership / link
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF07527 all species →	Hairy_orange	Hairy Orange	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003650 all species →	Domain	Orange domain	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR050370 all species →	Family	Hairy and Enhancer of Split/HEY-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10985 all species →	BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009952 all species →	Biological Process	anterior/posterior pattern specification	Interproscan
GO:0050767 all species →	Biological Process	regulation of neurogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06054	HES1; hairy and enhancer of split 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g9366.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

81.3Max TPM

51.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	51.81	81.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	81.27
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	78.89
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	78.72
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	77.47
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	71.07
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	65.88
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	64.91
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	64.00
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	63.07
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	62.98
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	61.95
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	56.27
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	55.79
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	54.03
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	52.99
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	51.85
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	51.57
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	51.26
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	51.25
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	50.50
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	50.29
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	49.30
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	48.52
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	47.99
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	47.91
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	46.62
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	44.84
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	44.69
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	44.00
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	41.06
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	40.89
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	39.58
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	39.49
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	36.56
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	35.35
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	33.69
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	30.66
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	27.99
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	25.52

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.