Gene detail

Detailed information of g937.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_020606357.1, protein LMBR1L-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q7ZX75	Protein LMBR1L OS=Xenopus laevis OX=8355 GN=lmbr1l PE=2 SV=1
Q5U4X7	Limb region 1 protein homolog OS=Xenopus tropicalis OX=8364 GN=lmbr1 PE=2 SV=1
Q9JIT0	Limb region 1 protein OS=Mus musculus OX=10090 GN=Lmbr1 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF01593	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan
PF00743	FMO-like	Flavin-binding monooxygenase-like	Family	Interproscan
PF11817	Foie-gras_1	Foie gras liver health family 1	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF04791	LMBR1	LMBR1-like membrane protein	Family	Interproscan
PF12781	AAA_9	ATP-binding dynein motor region	Domain	Interproscan
PF12777	MT	Microtubule-binding stalk of dynein motor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071	Domain	High mobility group box domain	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR050140	Family	SRY-related HMG-box transcription factors	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR050281	Family	Flavin monoamine oxidase and related enzymes	Interproscan
IPR002937	Domain	Amine oxidase	Interproscan
IPR024836	Family	Janus kinase and microtubule-interacting protein	Interproscan
IPR020946	Family	Flavin monooxygenase-like	Interproscan
IPR000960	Family	Flavin monooxygenase FMO	Interproscan
IPR050346	Family	Flavin-containing Monooxygenases	Interproscan
IPR039139	Family	Coiled-coil domain-containing protein 170-like	Interproscan
IPR021773	Domain	Trafficking protein particle complex subunit 11	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR045126	Family	Trafficking protein particle complex subunit TRAPPC10/Trs130	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR006876	Family	LMBR1-like membrane protein	Interproscan
IPR008075	Family	Lipocalin-interacting membrane receptor	Interproscan
IPR035706	Domain	Dynein heavy chain, ATP-binding dynein motor region	Interproscan
IPR026983	Family	Dynein heavy chain	Interproscan
IPR024743	Domain	Dynein heavy chain, coiled coil stalk	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10270	SOX TRANSCRIPTION FACTOR	Interproscan
PTHR10742	FLAVIN MONOAMINE OXIDASE	Interproscan
PTHR18935	UNCHARACTERIZED	Interproscan
PTHR23023	DIMETHYLANILINE MONOOXYGENASE	Interproscan
PTHR33332	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR18863	TSEC-2-RELATED	Interproscan
PTHR13251	EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1	Interproscan
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan
PTHR12625	LIPOCALIN-1 INTERACTING MEMBRANE RECEPTOR LIMR	Interproscan
PTHR46961	DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0019900	Molecular Function	kinase binding	Interproscan
GO:0004499	Molecular Function	N,N-dimethylaniline monooxygenase activity	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0050661	Molecular Function	NADP binding	Interproscan
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006891	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0034498	Biological Process	early endosome to Golgi transport	Interproscan
GO:0048193	Biological Process	Golgi vesicle transport	Interproscan
GO:1990071	Cellular Component	TRAPPII protein complex	Interproscan
GO:0001822	Biological Process	kidney development	Interproscan
GO:0007368	Biological Process	determination of left/right symmetry	Interproscan
GO:0060026	Biological Process	convergent extension	Interproscan
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0030286	Cellular Component	dynein complex	Interproscan
GO:0045505	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959	Molecular Function	dynein light intermediate chain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16757	CCDC77; coiled-coil domain-containing protein 77	-	Chromosome and associated proteins	ko03036	deepkoala