Gene detail

Detailed information of g9377.t1 in Montipora capitata

Genomic Location: Sc0000244:44034...65351
NR annotation: XP_044165078.1, neurabin-1-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g9377.t1

atggctacgagaactgaatacggcaaagaaaacaggttgcgagctcgcaaagaagtaccaaatcggacgaaaggcgataatcatgccggaagcaaggttgctgacggcgtcagaagtcagagctctgacacacgtaaaaatattattgattcaaaaacaaagcgaactgctggagctccagaaaatgacaccaagcaaaagccctataacaagttcggagcccctccaaagaagctaatttcgtcggacaaggcttataaaacccctttaaagaatgagaatgttcgcaaaactcgcgaggagaggcctcgagttcctcgtaaacctccctcggtggagtccactagtgataagggtaaagtagataaaattgatggtgaccgggagagtgatgccaagctgaatgttagcaagttaaagcacatttttgatgaaaccattgcaaatgaaactataaaagctcagcagaattttagaaaacccagaccaatttctgaagccctcgagaggttgaaaggtgataatgaccctttgcaatctgtaccaggaagatggtcgttgcctaattattacaagaagactcctcctacctcacccaatgatcccactcacaagccacatgtgtctcaaggtattgcagcgagaagagctttatttgagaatggcgggtccagtgaagatgtttaccccagggagaagcgttcgccaagtttgttagatcttgtcccagacttgaaagaattggatctaagcgcatttggtaaaactgaaacgtcaggtagtgcaatcagcttccttggcaaaaatgttgcttcacctagcccaagatctcggacaagttctgatcctggaactaaacgacttctgtattttgtaagttcccgcaaacgattcacttcggactccaaagctgtgaatggagggtaccagcaaacctgtgatgattcagtattgcgaaagcctccagtgtctgcagaaaaaagactttttaagtcacacagtgttgatcaaatgttgcttcaatctttgggttcagataagagcaaaattaatacagaagaagaaactgtcgaaaaggatcttgaaccttcattgtcagaaaaagaagacaagtttatctctagtgaggctgaaaagtcacagacagagacaaagccagaaatgccagttacaaattctgaaaatgttcatatagtgcctcgctttcggcgaaaggaggttcccaaagatgatttcttagatgacacccctggaagggtacgtgaagcaaattggaaggatgaagagatacctccagaagagttggcagaattggagtttgtacacaaacccccgaagcatgattttgcaagaattcgtgattcggttactcttaatgaaaacaaaacagaacttgagttgccattgaaaggcactggtgacattcacaagactgaaatcgaggaaaccagagagagagacagttcaggggaggacagcactggtagcattgttgagcacagcgatggtgatgaggatcctgtgccagtgccgacggtttctcctgtagcactgttattttctgcaaagcccaaatcatcatccttatctaaaggtggagacaaggataagtctcgcaaaagaagtgttggttttggtggggacacgcctaagatatttctaacatacagtgccgtggaatatgacaggggaaacgaggatattgaccctgttactgcatcagctgagtgggagttggaaaaacgagttgaaaagatggatgtgttttctgtggacttgtgcaaagacaatagaggtctgggattgagtattataggccttggtgtcggtacagatacaggagtagagaaactgggaatttttgtcaagtcactcacagaaggtggtgctgcagctgcagatggacgaatacaagtgaatgaccagattattgaagtcgatggaacttctcttgttggagtaacacagatgtttgcagcacagactcttaagaacaccagcggcatagtgaggtttcttatgggaagagataagagtagggcacatatgcaatcagcacacagaattgaccccaacattgaacagcaacttgatgtgctaagacaaaaactggctgaggctgaagcaaaagcagaaaatgtggagaaaagagccttgctggcagaaagaatggttcaaaatcaagcacctgctgtcacaagatctgaaacctctgatgagactgacttgaaagaagcaaagaagaaattagaagcacttacagaaaaggtccacacactagagtctgacctggcagtatcagaagcagagaatgatgatatggtgcgacagttggaggaaagtaaaggattgtacttgatccttgacaaaaagtatcatatggcaaagaacaaagtcaaggagttggaggaaagagagcaagcacatgccgaagtctctgaaagatccgctgtggaaatgaggttattacaggacaaggtcaaggagcttgaatggcaggttgcctctcttcagcaagctgcgtcagcgaaagacgttaaattaaacaagaaagaaatgtcaccatttgtaatagtcgacaagccagaagtgcataacaacaaaacagaggtccaagaagaagttcttgagaatggatttgcagctgaaatggagcaagcattggcagacttccagcttagctgggacacacaaggtgatcaagtttcagcagcaaaagaagatgacaagagaattgatttagaccttgacagtattccagttactgagacacttggtaatgattatctgagacagaagaagcgccttgcagaagcacagcagaaaagacacaagccaacacgtgccagctgggcaaagtccttggatgatgaaaatgaaatgattggaggtcacgaagcatccgaagaagacgaagaggaggagataagctcaaaaagcactgagcgagaaagtgaggatatcagtagaggtccagcacaaaggccagggctatttcttccaaaattcccggtcggtggctttaagcttcgttccacgggcacaaacctctttgatgggacacccttgaagagcggcgactcatccccccaggagatccgcgcaagcttcccgttgtcccataaagaggaaacacgcaacgttgtggtagagaatctgttagaaaagcagctttccaaagccgatatcaaggtatcgtcaatgccgacaacaacgcttgagcttgaggagcgagaagggcgtaaacttgtggaagaagaacgggaagattgcctttcagggtctacgaattcactggatgaaatcgaagaagccacaagaaggattgactcagaccttgcctcgtcccaggcctcttcgcgtggctcatccccattcctccctcccgccatgccgctgttgcaggttaagaatgttccagtgatggagccgtataatgaagcagccattgatgtccctcctgattacctagccgcttgtggactagcaaattcaaaccgtagctctccaagcatgtcttcacatgttgatggacagtcctcagtgggtagtcctgacaccccatcgtctggagtcgcacaactagtgtctgactgggacactgaccaggtctacatgtggctggttgcaaatgacctcgaagaatacgccgaggagttcagtaacaagagcatcgatggcaagcagttgttgaacttagatggctccaagctcaaggccatgggtgtaaatccaaaccatcgggctttgataaagaaaaaagtaaaggaaatgaaagcagagacggagcgtgaactgaaggcaaggaaacaacgagagaaagaacagaaaggaaataagaaagaaggaaagtttgaaaaaatgggattcatgaagaagaagggatattataacgtaagttaa

Transcript

g9377.t1

ATGGCTACGAGAACTGAATACGGCAAAGAAAACAGGTTGCGAGCTCGCAAAGAAGTACCAAATCGGACGAAAGGCGATAATCATGCCGGAAGCAAGGTTGCTGACGGCGTCAGAAGTCAGAGCTCTGACACACgtaaaaatattattgattCAAAAACAAAGCGAACTGCTGGAGCTCCAGAAAATGACACCAAGCAAAAGCCCTATAACAAGTTCGGAGCCCCTCCAAAGAAGCTAATTTCGTCGGACAAGGCTTATAAAACCCCTTTAAAGAATGAGAATGTTCGCAAAACTCGCGAGGAGAGGCCTCGAGTTCCTCGTAAACCTCCCTCGGTGGAGTCCACTAGTGATAAGGGTAAAGTAGATAAAATTGATGGTGACCGGGAGAGTGATGCCAAGCTGAATGTTAGCAAGTTAAAGCACATTTTTGATGAAACCATTGCAAATGAAACTATAAAAGCTCAGCAGAATTTTAGAAAACCCAGACCAATTTCTGAAGCCCTCGAGAGGTTGAAAGGTGATAATGACCCTTTGCAATCTGTACCAGGAAGATGGTCGTTGCCTAATTATTACAAGAAGACTCCTCCTACCTCACCCAATGATCCCACTCACAAGCCACATGTGTCTCAAGGTATTGCAGCGAGAAGAGCTTTATTTGAGAATGGCGGGTCCAGTGAAGATGTTTACCCCAGGGAGAAGCGTTCGCCAAGTTTGTTAGATCTTGTCCCAGACTTGAAAGAATTGGATCTAAGCGCATTTGGTAAAACTGAAACGTCAGGTAGTGCAATCAGCTTCCTTGGCAAAAATGTTGCTTCACCTAGCCCAAGATCTCGGACAAGTTCTGATCCTGGAACTAAACGACTTCTGTATTTTGTAAGTTCCCGCAAACGATTCACTTCGGACTCCAAAGCTGTGAATGGAGGGTACCAGCAAACCTGTGATGATTCAGTATTGCGAAAGCCTCCAGTGTCTGCAGAAAAAAGACTTTTTAAGTCACACAGTGTTGATCAAATGTTGCTTCAATCTTTGGGTTCAGATAAGAGCAAAATTAATACAGAAGAAGAAACTGTCGAAAAGGATCTTGAACCTTCATTGTCAGAAAAAGAAGACAAGTTTATCTCTAGTGAGGCTGAAAAGTCACAGACAGAGACAAAGCCAGAAATGCCAGTTACAAATTCTGAAAATGTTCATATAGTGCCTCGCTTTCGGCGAAAGGAGGTTCCCAAAGATGATTTCTTAGATGACACCCCTGGAAGGGTACGTGAAGCAAATTGGAAGGATGAAGAGATACCTCCAGAAGAGTTGGCAGAATTGGAGTTTGTACACAAACCCCCGAAGCATGATTTTGCAAGAATTCGTGATTCGGTTActcttaatgaaaacaaaacagaacttGAGTTGCCATTGAAAGGCACTGGTGACATTCACAAGACTGAAATCGAGGAAACCAGAGAGAGAGACAGTTCAGGGGAGGACAGCACTGGTAGCATTGTTGAGCACAGCGATGGTGATGAGGATCCTGTGCCAGTGCCGACGGTTTCTCCTGTAGCACTGTTATTTTCTGCAAAGCCCAAATCATCATCCTTATCTAAAGGTGGAGACAAGGATAAGTCTCGCAAAAGAAGTGTTGGTTTTGGTGGGGACACGCCTAAGATATTTCTAACATACAGTGCCGTGGAATATGACAGGGGAAACGAGGATATTGACCCTGTTACTGCATCAGCTGAGTGGGAGTTGGAAAAACGAGTTGAAAAGATGGATGTGTTTTCTGTGGACTTGTGCAAAGacAATAGAGGTCTGGGATTGAGTATTATAGGCCTTGGTGTCGGTACAGATACAGGAGTAGAGAAACTGGGAATTTTTGTCAAGTCACTCACAGAAGGTGGTGCTGCAGCTGCAGATGGACGAATACAAGTGAATGACCAGATTATTGAAGTCGATGGAACTTCTCTTGTTGGAGTAACACAGATGTTTGCAGCACAGACTCTTAAGAACACCAGCGGCATAGTGAGGTTTCTTATGGGAAGAGATAAGAGTAGGGCACATATGCAATCAGCACACAGAATTGACCCCAACATTGAACAGCAACTTGATGTGCTAAGACAAAAACTGGCTGAGGCTGAAGCAAAAGCAGAAAATGTGGAGAAAAGAGCCTTGCTGGCAGAAAGAATGGTTCAAAATCAAGCACCTGCTGTCACAAGATCTGAAACCTCTGATGAGACTGACTTGAAAGAAGCAAAGAAGAAATTAGAAGCACTTACAGAAAAGGTCCACACACTAGAGTCTGACCTGGCAGTATCAGAAGCAGAGAATGATGATATGGTGCGACAGTTGGAGGAAAGTAAAGGATTGTACTTGATCCTTGACAAAAAGTATCATATGGCAAAGAACAAAGTCAAGGAGTTGGAGGAAAGAGAGCAAGCACATGCCGAAGTCTCTGAAAGATCCGCTGTGGAAATGAGGTTATTACAGGACAAGGTCAAGGAGCTTGAATGGCAGGTTGCCTCTCTTCAGCAAGCTGCGTCAGCGAAAGACgttaaattaaacaagaaagaaatgtcACCATTTGTAATAGTCGACAAGCCAGAAGTGCATAACAACAAAACAGAGGTCCAAGAAGAAGTTCTTGAGAATGGATTTGCAGCTGAAATGGAGCAAGCATTGGCAGACTTCCAGCTTAGCTGGGACACACAAGGTGATCAAGTTTCAGCAGCAAAAGAAGATGACAAGAGAATTGATTTAGACCTTGACAGTATTCCAGTTACTGAGACACTTGGTAATGATTATCTGAGACAGAAGAAGCGCCTTGCAGAAGCACAGCAGAAAAGACACAAGCCAACACGTGCCAGCTGGGCAAAGTCCTTGGATGATGAAAATGAAATGATTGGAGGTCACGAAGCATCCGAAGAAGACGAAGAGGAGGAGATAAGCTCAAAAAGCACTGAGCGAGAAAGTGAGGATATCAGTAGAGGTCCAGCACAAAGGCCAGGGCTATTTCTTCCAAAATTCCCGGTCGGTGGCTTTAAGCTTCGTTCCACGGGCACAAACCTCTTTGATGGGACACCCTTGAAGAGCGGCGACTCATCCCCCCAGGAGATCCGCGCAAGCTTCCCGTTGTCCCATAAAGAGGAAACACGCAACGTTGTGGTAGAGAATCTGTTAGAAAAGCAGCTTTCCAAAGCCGATATCAAGGTATCGTCAATGCCGACAACAACGCTTGAGCTTGAGGAGCGAGAAGGGCGTAAACTTGTGGAAGAAGAACGGGAAGATTGCCTTTCAGGGTCTACGAATTCACTGGATGAAATCGAAGAAGCCACAAGAAGGATTGACTCAGACCTTGCCTCGTCCCAGGCCTCTTCGCGTGGCTCATCCCCATTCCTCCCTCCCGCCATGCCGCTGTTGCAGGTTAAGAATGTTCCAGTGATGGAGCCGTATAATGAAGCAGCCATTGATGTCCCTCCTGATTACCTAGCCGCTTGTGGACTAGCAAATTCAAACCGTAGCTCTCCAAGCATGTCTTCACATGTTGATGGACAGTCCTCAGTGGGTAGTCCTGACACCCCATCGTCTGGAGTCGCACAACTAGTGTCTGACTGGGACACTGACCAGGTCTACATGTGGCTGGTTGCAAATGACCTCGAAGAATACGCCGAGGAGTTCAGTAACAAGAGCATCGATGGCAAGCAGTTGTTGAACTTAGATGGCTCCAAGCTCAAGGCCATGGGTGTAAATCCAAACCATCGGGCTTTgataaagaaaaaagtaaaggaAATGAAAGCAGAGACGGAGCGTGAACTGAAGGCAAGGAAACAACGAGAGAAAGAACAGAAAGGAAATAAGAAAGaaggaaagtttgaaaaaatgggATTCATGAAGAAGAAGGGATATTATAACGTAAGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ULJ8	Neurabin-1 OS=Homo sapiens OX=9606 GN=PPP1R9A PE=1 SV=2
O35867	Neurabin-1 OS=Rattus norvegicus OX=10116 GN=Ppp1r9a PE=1 SV=1
Q96SB3	Neurabin-2 OS=Homo sapiens OX=9606 GN=PPP1R9B PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004243 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17817 all species →	PDZ_5	PDZ domain	Domain	Interproscan
PF07647 all species →	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR040645 all species →	Domain	Neurabin-1/2, PDZ domain	Interproscan
IPR043446 all species →	Family	Neurabin-like family	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16154 all species →	NEURABIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0014069 all species →	Cellular Component	postsynaptic density	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0019722 all species →	Biological Process	calcium-mediated signaling	Interproscan
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0031175 all species →	Biological Process	neuron projection development	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17551	PPP1R9; neurabin	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g9377.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

107.6Max TPM

50.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	49.26	105.75
whole organisms · low pH treatment	15	15	53.33	107.59
whole organisms · extra low pH treatment pH treatment	12	12	49.71	76.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	105.75
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	77.08
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	75.74
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	75.31
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	58.73
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	57.15
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	55.62
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	53.90
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	53.49
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	52.37
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	50.41
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	46.95
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	45.09
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	41.64
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	40.48
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	29.22
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	28.99
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	23.43
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	22.86
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	20.50
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	19.72
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	107.59
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	82.32
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	76.92
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	73.00
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	58.50
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	56.82
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	50.37
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	48.85
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	47.18
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	37.59
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	35.94
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	35.08
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	33.92
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	31.16
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	24.72
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	76.17
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	66.12
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	66.04
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	55.94
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	54.89
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	51.49
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	48.05
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	45.66
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	39.69
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	34.07
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	32.91
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	25.51

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.