Gene detail

Detailed information of g948.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH3041034.1, unnamed protein product [Porites lobata]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P58389	Serine/threonine-protein phosphatase 2A activator OS=Mus musculus OX=10090 GN=Ptpa PE=1 SV=1
Q28717	Serine/threonine-protein phosphatase 2A activator OS=Oryctolagus cuniculus OX=9986 GN=PTPA PE=1 SV=1
Q2KJ44	Serine/threonine-protein phosphatase 2A activator OS=Bos taurus OX=9913 GN=PTPA PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000949 (this species only)
Orthogroup (gene family)	OG0001057 (this species only)
Orthogroup (gene family)	OG0002126 (this species only)
Orthogroup (gene family)	OG0002555 (this species only)
Orthogroup (gene family)	OG0003201 (this species only)
Orthogroup (gene family)	OG0003335 (this species only)
Orthogroup (gene family)	OG0005388 (this species only)
Orthogroup (gene family)	OG0007816 (this species only)
Orthogroup (gene family)	OG0011957 (this species only)
Orthogroup (gene family)	OG0012671 (this species only)
Orthogroup (gene family)	OG0015709 (this species only)
Orthogroup (gene family)	OG0059595 (this species only)
Orthogroup (gene family)	OG0080409 (this species only)
Orthogroup (gene family)	OG0170728 (this species only)
Orthogroup (gene family)	OG0171269 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03129 all species →	HGTP_anticodon	Anticodon binding domain	Domain	Interproscan
PF00458 all species →	WHEP-TRS	WHEP-TRS domain	Domain	Interproscan
PF14773 all species →	VIGSSK	Helicase-associated putative binding domain, C-terminal	Family	Interproscan
PF03095 all species →	PTPA	Phosphotyrosyl phosphate activator (PTPA) protein	Family	Interproscan
PF00854 all species →	PTR2	POT family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033721 all species →	Domain	Prolyl-tRNA synthetase, catalytic domain	Interproscan
IPR000738 all species →	Domain	WHEP-TRS domain	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR036621 all species →	Homologous_superfamily	Anticodon-binding domain superfamily	Interproscan
IPR009068 all species →	Homologous_superfamily	uS15/NS1, RNA-binding domain superfamily	Interproscan
IPR004154 all species →	Domain	Anticodon-binding	Interproscan
IPR004499 all species →	Family	Proline-tRNA ligase, class IIa, archaeal-type	Interproscan
IPR029256 all species →	Domain	Helicase-associated putative binding domain	Interproscan
IPR004327 all species →	Family	Phosphotyrosyl phosphatase activator, PTPA	Interproscan
IPR043170 all species →	Homologous_superfamily	Phosphotyrosyl phosphatase activator, C-terminal lid domain	Interproscan
IPR037218 all species →	Homologous_superfamily	PTPA superfamily	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR050849 all species →	Family	HAD-like hydrolase superfamily phosphatase	Interproscan
IPR040108 all species →	Family	Laa1/Sip1/HEATR5	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR000109 all species →	Family	Proton-dependent oligopeptide transporter family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR43382 all species →	PROLYL-TRNA SYNTHETASE	Interproscan
PTHR10012 all species →	SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B	Interproscan
PTHR28181 all species →	UPF0655 PROTEIN YCR015C	Interproscan
PTHR21663 all species →	HYPOTHETICAL HEAT DOMAIN-CONTAINING	Interproscan
PTHR11654 all species →	OLIGOPEPTIDE TRANSPORTER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0004827 all species →	Molecular Function	proline-tRNA ligase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006433 all species →	Biological Process	prolyl-tRNA aminoacylation	Interproscan
GO:0017101 all species →	Cellular Component	aminoacyl-tRNA synthetase multienzyme complex	Interproscan
GO:0019211 all species →	Molecular Function	phosphatase activator activity	Interproscan
GO:0000159 all species →	Cellular Component	protein phosphatase type 2A complex	Interproscan
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0008160 all species →	Molecular Function	protein tyrosine phosphatase activator activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0008104 all species →	Biological Process	protein localization	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030139 all species →	Cellular Component	endocytic vesicle	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0071916 all species →	Molecular Function	dipeptide transmembrane transporter activity	Interproscan
GO:0140206 all species →	Biological Process	dipeptide import across plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11495	CENPA; histone H3-like centromeric protein A	-	Chromosome and associated proteins	ko03036	deepkoala
K17605	PPP2R4, PTPA; serine/threonine-protein phosphatase 2A activator	-	Protein phosphatases and associated proteins	ko01009	deepkoala
K22911	TH2; thiamine phosphate phosphatase / amino-HMP aminohydrolase	EC:3.1.3.100 EC:3.5.99.-	Thiamine metabolism	ko00730	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.