Gene detail

Detailed information of g9483.t1 in Acropora digitifera

Genomic Location: chr4Alt:25129903...25136066
NR annotation: XP_044174461.1, uncharacterized protein LOC122958096 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g9483.t1

ATGTCCGCTTCTAATGTGCTTAATTTGGAAATGGCCACGGGTTCAGAATATACAGAGGAGCAACTCAACTACTACAGGATTTGTTGTATTACCACTGACGAGTTAACGGACGGTCTGAGAACGATCTTCAAACAGGAATGGGACAAACGTTACGCGACTACACTTGGAGAATGGAAAGATGAGGCCAAAAACGGACAAGACTTCAAAAACAGGGAGTCTCCACGAAACCAAGCAAGAAATCAAGAACTATTAGCAACCATGATCAATGGAAATAGAGCCGAATGGGATTGCACAATGCTGTTTTACGCTATCCTGTTTTCCGATTGTATTGGGCGAGGTCTGAATGCAGTAGTCCGGTCAAACGTAGATGATCTGAGAAAATTCCGTAACCAAGACTTTGCTCATTTGCCTCGAGGCCACATCCCTGAGCCAAAGTTTCAAAGTGCAATCGCCAAAGTCCAGGGTGCGTTTCAGGCTCTTGGCCTGTCCACTCAAAAGATCCAAGAAATCAGAAATCAAGCAAGTTTTCCCACCAGCTACTTGAACAAGCTCAAGCACGAAGTCAAAGTCCTTGAAGATCAATTGCAAAGTGAGACCACGCGCTTTTGCATTCTTCCGCCGAAGCCTTCGCACGATGTTGCCGCGCGAAATGATCAGGTGGCTAAAATAACTGAAGGGTTAAGACAACTAAAAGAGACCAACGAGAGCCGACTAAGCTACCTTTACATCTCAGGAAATCCTGGAAGTGGCAAATCTCAGTTGGCTGGACTCGTAGCAGAGCAAATTTTCATGGAAAGCACGGATGCATTTATATTTGTGATGACTTTGAATGCTGCAAACCTTGACAGGCTTCTAGATTCATATGTCTCTTTTGCTCGACATCTCAAGTGTCCAGAGTATGCAGTTACCAATACTTTAAATGACAAAGACCTGAAGACGGAGGAGAAGATCGCTTACATAAAGTCTTTAGCTGGTACCAAAGTGGAGCTTTACGCGTCGTGGCTGTTGTTAGTTGACAATGTGGTCAGCATACCTGAGATGTATGCTCATTTGCCAGACACAGGAAACAGCCACTGGAGTAAAGGTCAATTGCTGATCACATCTCAGGACGCCACTTCTATCCCTTCAGATAACAGTTTCATTAAACAAATGTCTGTAAGCCAGGGCATGGCGCCATCTGACGCCACCTCCTTATTGGCCACCATTTCCGGTATCGCTGACGATGAGACAGCGAAAAAAGTTGCACATGCATTAGACTATCAACCTCTTGCCTTAGCAAGCGCCGCTACGTTTGTAAAACTACTTTGCGACAATAAACCATCATCGAACCTGGGCTGGAGAGACTTTCTCAAGAAACTTGACGAAGGCCAACTTCAAAACACTGAGAGCTTTCTTTCAAACACAAATGTAAGTTATCCATATTCTATGACCACTGCGATTGCATTAGCTGTGGAAAAGTCGATGTCATCCGACAGAGTTTTAAAACATGCATTCATTGTTATTTCCCTTTGTGCGCCACAACCATTAACCCTTGACATTGTTACAAACTACGTTCAGAAGGCCGCGGAGAATAGCGATATGAACACGGAAGAGGAATTCAAGGACAAAGATGTGATTGTTTTGAGGATTCGCAAAAGGTCGCTCCTGTTATTTGAAGAAGACAATGGCGAAGTCTACATTCGCATACATCTAGTTGTAAGACATGTCATTCAACGTTTTATTAAACAGCATTGGGAGACTCAACGTTTTCAAGTAGTTCATATGGTCATTTTGGCTTTGAATCAATTCATAGTAGACAGGAAAACTGACGATTATACTGCTAATGGATTTAGGTTACTAGTTCCTCATTTGAGATTGCTTTCAAAGCTATTTGAAGCTTGTTTCAAGGAAAATGACTTATTTGAAGCCATCAAAAATGAGATTTTTAACTTGAAAGATTCTTTTATTGCCTTTGGGGAGATTTGTTGTGTACATTTCGACCTGAAAGCAGCAAAACGCTTTGCTAGTTTAGCTCTAAAGCTAGTTTCCCATGATGGTATCCTTGATTTCTCGTATGCCGCAAGCGCCGATTCTCTCATGGGCCACGTACTTCTCCAGATGGGACTGTTTGAGGAGGGAAAAGGTCACTTCGAACGCTCGCTCGCTCGTCGGCTTGAAATGTTTGGCCCTCAACATCCTGATGTCGCAACTTCTTATGACAACTTAGCTACTGTACTTGGTGATCAAGGTGAGCTGAAGCAAGCAAAGGAGTATTATGAGCGTGCTCTTGCTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCGAGTACTTATAACAACTTAGCTACTGTACTTTGTGATCAAGGTGAGCTGAAGCAAGCAAAGGAGTATTATGAACGTGCTCTTGCTATTATGCAACAAACTCTGGGGCCTCAACATCCTGATGTCGCAAGTTCCCTTAACAACTTAGCTAATGTACTTGGTGATCAAGGTGAGCTGAAGCAAGCAAAGGAGTATCATGAGCGTGCTCTTGCTATTAGGCAACAAACTCTGGGGCCTCAACATCCTATTGTCGCGAGTTCTTATAACAACTTAGGTACTGTATTTAGTTATGAAGGTGACCTGAAGAAAGCAAAGGAGTATCATGAGCGTGCTCTTGCTATTACGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCGAGTTCTCTTAACAACTTAGCTACTGTACTTCATGATCAACGTGAGCTGAAGCAAGCAAAGGAGTATTATAAACGTGCTCTTGCTATTAGGCAACAAACTCTGGGGCCTCAACATCCTTATGTCGCAAGTTCCCTTAACAACTTAGCTGCTGTACTTGGTGATCAAGGTGAGCTGAAGCAAGCAAAGGAGTATCATGAGCGTGCTCTTGCTATTAGGCAACAAACTCTGGGGCCTCAACATCCTGATGTCGCGAGTTCTTATAACAACTTAGCTGCTGTACTTGGTAATCAAGGTGAGCTGAAGCAAGCAAAGGAGTATCATGAGCGTGCTCTTGCTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGGCGCGAGTTCTCTTAACAACTTAGCTAACGTACTTGGTGATCAAGGTGACCTGAAGGAAGCAAAGGAGTATCATAAGCGTGCTGCTGCTAATAGGCAACAGACTTTGGGTCCTCAACGTAGTAATGTTTGTAAGTTGCTATAA

Transcript

chr4Alt.g9483.t1

TAGGAATTGATAAGGTTTACTTTACATAAATGAAAATTTAATTCAATAAGTAACATATTTTAACTATTATAGTACGTTAAGATAAATCTAGGACACTTGTAAAAATATATATACACAAATAAAAATTATAAGGCCCTGACGAATGTCCGCTTCTAATGTGCTTAATTTGGAAATGGCCACGGGTTCAGAATATACAGAGGAGCAACTCAACTACTACAGGATTTGTTGTATTACCACTGACGAGTTAACGGACGGTCTGAGAACGATCTTCAAACAGGAATGGGACAAACGTTACGCGACTACACTTGGAGAATGGAAAGATGAGGCCAAAAACGGACAAGACTTCAAAAACAGGGAGTCTCCACGAAACCAAGCAAGAAATCAAGAACTATTAGCAACCATGATCAATGGAAATAGAGCCGAATGGGATTGCACAATGCTGTTTTACGCTATCCTGTTTTCCGATTGTATTGGGCGAGGTCTGAATGCAGTAGTCCGGTCAAACGTAGATGATCTGAGAAAATTCCGTAACCAAGACTTTGCTCATTTGCCTCGAGGCCACATCCCTGAGCCAAAGTTTCAAAGTGCAATCGCCAAAGTCCAGGGTGCGTTTCAGGCTCTTGGCCTGTCCACTCAAAAGATCCAAGAAATCAGAAATCAAGCAAGTTTTCCCACCAGCTACTTGAACAAGCTCAAGCACGAAGTCAAAGTCCTTGAAGATCAATTGCAAAGTGAGACCACGCGCTTTTGCATTCTTCCGCCGAAGCCTTCGCACGATGTTGCCGCGCGAAATGATCAGGTGGCTAAAATAACTGAAGGGTTAAGACAACTAAAAGAGACCAACGAGAGCCGACTAAGCTACCTTTACATCTCAGGAAATCCTGGAAGTGGCAAATCTCAGTTGGCTGGACTCGTAGCAGAGCAAATTTTCATGGAAAGCACGGATGCATTTATATTTGTGATGACTTTGAATGCTGCAAACCTTGACAGGCTTCTAGATTCATATGTCTCTTTTGCTCGACATCTCAAGTGTCCAGAGTATGCAGTTACCAATACTTTAAATGACAAAGACCTGAAGACGGAGGAGAAGATCGCTTACATAAAGTCTTTAGCTGGTACCAAAGTGGAGCTTTACGCGTCGTGGCTGTTGTTAGTTGACAATGTGGTCAGCATACCTGAGATGTATGCTCATTTGCCAGACACAGGAAACAGCCACTGGAGTAAAGGTCAATTGCTGATCACATCTCAGGACGCCACTTCTATCCCTTCAGATAACAGTTTCATTAAACAAATGTCTGTAAGCCAGGGCATGGCGCCATCTGACGCCACCTCCTTATTGGCCACCATTTCCGGTATCGCTGACGATGAGACAGCGAAAAAAGTTGCACATGCATTAGACTATCAACCTCTTGCCTTAGCAAGCGCCGCTACGTTTGTAAAACTACTTTGCGACAATAAACCATCATCGAACCTGGGCTGGAGAGACTTTCTCAAGAAACTTGACGAAGGCCAACTTCAAAACACTGAGAGCTTTCTTTCAAACACAAATGTAAGTTATCCATATTCTATGACCACTGCGATTGCATTAGCTGTGGAAAAGTCGATGTCATCCGACAGAGTTTTAAAACATGCATTCATTGTTATTTCCCTTTGTGCGCCACAACCATTAACCCTTGACATTGTTACAAACTACGTTCAGAAGGCCGCGGAGAATAGCGATATGAACACGGAAGAGGAATTCAAGGACAAAGATGTGATTGTTTTGAGGATTCGCAAAAGGTCGCTCCTGTTATTTGAAGAAGACAATGGCGAAGTCTACATTCGCATACATCTAGTTGTAAGACATGTCATTCAACGTTTTATTAAACAGCATTGGGAGACTCAACGTTTTCAAGTAGTTCATATGGTCATTTTGGCTTTGAATCAATTCATAGTAGACAGGAAAACTGACGATTATACTGCTAATGGATTTAGGTTACTAGTTCCTCATTTGAGATTGCTTTCAAAGCTATTTGAAGCTTGTTTCAAGGAAAATGACTTATTTGAAGCCATCAAAAATGAGATTTTTAACTTGAAAGATTCTTTTATTGCCTTTGGGGAGATTTGTTGTGTACATTTCGACCTGAAAGCAGCAAAACGCTTTGCTAGTTTAGCTCTAAAGCTAGTTTCCCATGATGGTATCCTTGATTTCTCGTATGCCGCAAGCGCCGATTCTCTCATGGGCCACGTACTTCTCCAGATGGGACTGTTTGAGGAGGGAAAAGGTCACTTCGAACGCTCGCTCGCTCGTCGGCTTGAAATGTTTGGCCCTCAACATCCTGATGTCGCAACTTCTTATGACAACTTAGCTACTGTACTTGGTGATCAAGGTGAGCTGAAGCAAGCAAAGGAGTATTATGAGCGTGCTCTTGCTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCGAGTACTTATAACAACTTAGCTACTGTACTTTGTGATCAAGGTGAGCTGAAGCAAGCAAAGGAGTATTATGAACGTGCTCTTGCTATTATGCAACAAACTCTGGGGCCTCAACATCCTGATGTCGCAAGTTCCCTTAACAACTTAGCTAATGTACTTGGTGATCAAGGTGAGCTGAAGCAAGCAAAGGAGTATCATGAGCGTGCTCTTGCTATTAGGCAACAAACTCTGGGGCCTCAACATCCTATTGTCGCGAGTTCTTATAACAACTTAGGTACTGTATTTAGTTATGAAGGTGACCTGAAGAAAGCAAAGGAGTATCATGAGCGTGCTCTTGCTATTACGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCGAGTTCTCTTAACAACTTAGCTACTGTACTTCATGATCAACGTGAGCTGAAGCAAGCAAAGGAGTATTATAAACGTGCTCTTGCTATTAGGCAACAAACTCTGGGGCCTCAACATCCTTATGTCGCAAGTTCCCTTAACAACTTAGCTGCTGTACTTGGTGATCAAGGTGAGCTGAAGCAAGCAAAGGAGTATCATGAGCGTGCTCTTGCTATTAGGCAACAAACTCTGGGGCCTCAACATCCTGATGTCGCGAGTTCTTATAACAACTTAGCTGCTGTACTTGGTAATCAAGGTGAGCTGAAGCAAGCAAAGGAGTATCATGAGCGTGCTCTTGCTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGGCGCGAGTTCTCTTAACAACTTAGCTAACGTACTTGGTGATCAAGGTGACCTGAAGGAAGCAAAGGAGTATCATAAGCGTGCTGCTGCTAATAGGCAACAGACTTTGGGTCCTCAACGTAGTAATGTTTGTAAGTTGCTATAACAACCTAGCTACTGTACTTGGCAATCAAGGTGACCTGAGGCA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13176 all species →	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR002151 all species →	Family	Kinesin light chain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45783 all species →	KINESIN LIGHT CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005871 all species →	Cellular Component	kinesin complex	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0019894 all species →	Molecular Function	kinesin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g9483.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.