Gene detail

Detailed information of g95.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_274218080.1, DUF2924 domain-containing protein [Pseudovibrio exalbescens]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3EWZ3	Coadhesin (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q03350	Thrombospondin-2 OS=Mus musculus OX=10090 GN=Thbs2 PE=1 SV=2
P07996	Thrombospondin-1 OS=Homo sapiens OX=9606 GN=THBS1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000220 (this species only)
Orthogroup (gene family)	OG0000316 (this species only)
Orthogroup (gene family)	OG0000463 (this species only)
Orthogroup (gene family)	OG0001472 (this species only)
Orthogroup (gene family)	OG0002117 (this species only)
Orthogroup (gene family)	OG0002652 (this species only)
Orthogroup (gene family)	OG0004422 (this species only)
Orthogroup (gene family)	OG0005429 (this species only)
Orthogroup (gene family)	OG0017421 (this species only)
Orthogroup (gene family)	OG0032604 (this species only)
Orthogroup (gene family)	OG0059666 (this species only)
Orthogroup (gene family)	OG0080307 (this species only)
Orthogroup (gene family)	OG0172342 (this species only)
Orthogroup (gene family)	OG0173267 (this species only)
Orthogroup (gene family)	OG0174499 (this species only)
Transcription factor family	Fork_head · all TF in this species
Transcription factor family	zf-CCCH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01323 all species →	DSBA	DSBA-like thioredoxin domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF00250 all species →	Forkhead	Forkhead domain	Domain	Interproscan
PF00642 all species →	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan
PF11149 all species →	DUF2924	Protein of unknown function (DUF2924)	Family	Interproscan
PF13899 all species →	Thioredoxin_7	Thioredoxin-like	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF12780 all species →	AAA_8	P-loop containing dynein motor region D4	Domain	Interproscan
PF01762 all species →	Galactosyl_T	Galactosyltransferase	Family	Interproscan
PF00132 all species →	Hexapep	Bacterial transferase hexapeptide (six repeats)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001853 all species →	Domain	DSBA-like thioredoxin domain	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR052065 all species →	Family	Complement and asymmetry regulator	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002464 all species →	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001766 all species →	Domain	Fork head domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR047519 all species →	Domain	Forkhead box protein Q2-like, forkhead domain	Interproscan
IPR050211 all species →	Family	Forkhead box domain-containing protein	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR030844 all species →	Family	PAN2-PAN3 deadenylation complex subunit PAN3	Interproscan
IPR021322 all species →	Family	Protein of unknown function DUF2924	Interproscan
IPR051099 all species →	Family	Anterior Gradient and Thioredoxin Domain	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR026983 all species →	Family	Dynein heavy chain	Interproscan
IPR024317 all species →	Domain	Dynein heavy chain, AAA module D4	Interproscan
IPR002659 all species →	Family	Glycosyl transferase, family 31	Interproscan
IPR047324 all species →	Family	Gamma carbonic anhydrase-like	Interproscan
IPR050484 all species →	Family	Transferase Hexapeptide/Carbonic Anhydrase	Interproscan
IPR001451 all species →	Repeat	Hexapeptide repeat	Interproscan
IPR011004 all species →	Homologous_superfamily	Trimeric LpxA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22906 all species →	PROPERDIN	Interproscan
PTHR18934 all species →	ATP-DEPENDENT RNA HELICASE	Interproscan
PTHR11829 all species →	FORKHEAD BOX PROTEIN	Interproscan
PTHR12272 all species →	DEADENYLATION COMPLEX SUBUNIT PAN3	Interproscan
PTHR15337 all species →	ANTERIOR GRADIENT PROTEIN-RELATED	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR10676 all species →	DYNEIN HEAVY CHAIN FAMILY PROTEIN	Interproscan
PTHR11214 all species →	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE	Interproscan
PTHR13061 all species →	DYNACTIN SUBUNIT P25	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009653 all species →	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000289 all species →	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0008143 all species →	Molecular Function	poly(A) binding	Interproscan
GO:0031251 all species →	Cellular Component	PAN complex	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005868 all species →	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008569 all species →	Molecular Function	minus-end-directed microtubule motor activity	Interproscan
GO:0030286 all species →	Cellular Component	dynein complex	Interproscan
GO:0035721 all species →	Biological Process	intraciliary retrograde transport	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0060294 all species →	Biological Process	cilium movement involved in cell motility	Interproscan
GO:0097729 all species →	Cellular Component	9+2 motile cilium	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016758 all species →	Molecular Function	hexosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07152	SCO1; protein SCO1	-	Mitochondrial biogenesis	ko03029	deepkoala
K07819	B3GALT1; beta-1,3-galactosyltransferase 1	EC:2.4.1.86	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.