Gene detail

Detailed information of g951.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: KAI0235432.1, hypothetical protein LSAT2_014070 [Lamellibrachia satsuma]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PAJ1	Breakpoint cluster region protein OS=Mus musculus OX=10090 GN=Bcr PE=1 SV=3
F1LXF1	Breakpoint cluster region protein OS=Rattus norvegicus OX=10116 GN=Bcr PE=1 SV=4
P11274	Breakpoint cluster region protein OS=Homo sapiens OX=9606 GN=BCR PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000348 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000387 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000437 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000679 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001500 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002286 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003486 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005960 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006500 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0009475 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0011571 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0042486 (this species only) · gene tree & orthology
Transcription factor family	THAP · all TF in this species
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20499 all species →	DUF6729	Domain of unknown function (DUF6729)	Domain	Interproscan
PF08610 all species →	Pex16	Peroxisomal membrane protein (Pex16)	Family	Interproscan
PF13664 all species →	DUF4149	Domain of unknown function (DUF4149)	Domain	Interproscan
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF00728 all species →	Glyco_hydro_20	Glycosyl hydrolase family 20, catalytic domain	Domain	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan
PF05485 all species →	THAP	THAP domain	Domain	Interproscan
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF21320 all species →	HTH_65	Rv2258c-like winged HTH domain	Domain	Interproscan
PF19057 all species →	PH_19	PH domain	Domain	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF10496 all species →	Syntaxin-18_N	SNARE-complex protein Syntaxin-18 N-terminus	Domain	Interproscan
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046616 all species →	Domain	Domain of unknown function DUF6729	Interproscan
IPR013919 all species →	Family	Peroxisome membrane protein, Pex16	Interproscan
IPR053009 all species →	Family	Xanthocillin Biosynthesis-Associated Protein	Interproscan
IPR025423 all species →	Domain	Domain of unknown function DUF4149	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR028846 all species →	Family	Recoverin family	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR038901 all species →	Family	Hexosaminidase D-like	Interproscan
IPR015883 all species →	Domain	Glycoside hydrolase family 20, catalytic domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR027124 all species →	Family	SWR1-complex protein 5/Craniofacial development protein 1/2	Interproscan
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR006612 all species →	Domain	THAP-type zinc finger	Interproscan
IPR050373 all species →	Family	Fibrinogen C-terminal domain-containing protein	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR048711 all species →	Domain	S-adenosylmethionine-dependent methyltransferase Rv2258c-like, winged HTH domain	Interproscan
IPR053173 all species →	Family	Class I-like SAM-binding MTase	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR037769 all species →	Family	Abr/Bcr	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR000727 all species →	Domain	Target SNARE coiled-coil homology domain	Interproscan
IPR019529 all species →	Domain	SNARE-complex protein Syntaxin-18, N-terminal	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR003649 all species →	Domain	B-box, C-terminal	Interproscan
IPR050617 all species →	Family	E3 ubiquitin-protein ligases and FN3/SPRY domain-containing proteins	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24401 all species →	SI:CH211-243P7.3-RELATED	Interproscan
PTHR13299 all species →	UNCHARACTERIZED	Interproscan
PTHR23241 all species →	LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATED	Interproscan
PTHR23055 all species →	CALCIUM BINDING PROTEINS	Interproscan
PTHR21040 all species →	UNCHARACTERIZED	Interproscan
PTHR23227 all species →	BUCENTAUR RELATED	Interproscan
PTHR43157 all species →	PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED	Interproscan
PTHR19143 all species →	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan
PTHR45128 all species →	METHYLTRANSFERASE TYPE 11	Interproscan
PTHR23182 all species →	BREAKPOINT CLUSTER REGION PROTEIN BCR	Interproscan
PTHR15959 all species →	SYNTAXIN-18	Interproscan
PTHR24099 all species →	E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0007031 all species →	Biological Process	peroxisome organization	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0015929 all species →	Molecular Function	hexosaminidase activity	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08492	STX18; syntaxin 18	-	Membrane trafficking	ko04131	deepkoala
K13335	PEX16; peroxin-16	-	Peroxisome	ko04146	deepkoala
K14459	HEX; hexosaminidase	EC:3.2.1.52	Other glycan degradation	ko00511	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →