Gene detail

Detailed information of g9540.t2 in Acropora digitifera

Genomic Location: chr4Alt:25945162...25965427
NR annotation: XP_015764131.1, PREDICTED: netrin receptor UNC5C-like isoform X1 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g9540.t2

ATGGAAATCCGCTTTAGCAGGATCTCTCTGCTTTATTTGGTGCCTTTGGTGTGTGTCCTAAGTTCTTCGCGAAATCAAGCTCGGCTCGAAGACTGGAAAAGCCAAGAGGTGGTAAAACCTGAATTTATTGCTGAACCAAATGATGAATATGTTCAATCAAATTCTTCAGTTTCTTTGTTCTGTGAGGCAAGGTTTGTTTTCAAGCTTAAAATCAACTGCAGTGGAGGGCTGGTTCCTGAAATATGGCTGAAAAGTGAAGATGAAAATAATAAAACATTGCTCATTGTGGATGTCTCTCATACTACGATGAAAGCCAGGAACCTTGCAAGGGTATCTTGTGTTTGCTATGCTACTGGCTACAAAGGCTCTGTTTTAAAAAGTCGACCAGCACTGGTTGCATTAGCATATCTTAACAAGGACTTTGTGATTCTACCATCAAACAATGTCAGAGTTGCAAAAAACTCTATTTCTGTCTTGAGATGCAACCCTCCCACAGGTCTACCAATCCCAAACGTTTACTGGGAAAAAAATGATAAGCCTTTGAAGTCACTTGCAGATGAACGAATTGAGGAGACTAAGCAAGGAAACCTATCATTGCTTATCATAAGAGATGCAAAAGTTCAGGATTCTGGCCATTATCGATGTGTAGCATCAAATTTTGTGGGAAAAAGTAAAAGCCAAGCACTCAGGCTTAAGGTTTATGTTGACGGTGGTTGGTCTGAATGGCATGAATTCTTGGCTTGTTCTGCTAGTAAATGTGGTAAAGACAAACAGATGTTGAAGCGTTCTTGTAACAACCCTGATCCACAAAATGGTGGACAGTTTTGCTCTGGAGTAGGTTTCAAATTTAAGAAGTGTCGGGACGTTTGCCCAGCTTTGGAAATAATCTGCCCCAATGACACAAATGTTTTTAGTAACCACTCTGACACCGTGAAGAACTTCTCTTGGAGTAAGCCAAAGGTCATCAACCGAAAAAATGGAACAAATTTTTCTGTTGAAGTTGAGCCATCTTGGGCTGTACCCCCAGTTGATTTTAATACCACAGGGAGCACTGTAATTACATATTTTGCAAGACACAAGTATGGACAGACCATCAATTGCTCATTCACCATTACAGTGTTGAATGGCTCATCAAAGGCGTGCTTAAGCGAAGATTGTGAGAGTGCTACAACGCAGCAAGGCACAACTGTCTCCACTGAGTTCTCAGCTGACCGATCGGTGCTCTTAAGATTTTGGTTGAGTGCCAGGAAGTCACGCAAAGATTGTGAAAAACTAGCAGCACCTTCTGTTGAAAGATTTGAAAGGCATACAGAGGAAAGGTTTTCCTTGATAAATTGCGGCGATTCTCACAGGGAAACTGCAGACTTTCCTGGAAAACTTAGAGCTGGATCCCCCACCGTAGAAGGTGGAGAACATTTTGAGTTTTTGCCATCTTGGAAAGATGTTGTTGTTTCAGCACAAATCCCTGGCACCATTCCTGATGTAAAGGATAACGAAAATGCTCCATTAAAGGTGCCAAAGAATGAAGAAAAAGGAAGTAATAGAAGAAAAAACACCTCTATTGGTGGCAAATCCACAACATCAGAAATCTCTAGAATGTTGTGGAATATTACAAACCTCCCTGAGAACATTGATCCCAATATGGTTGCCTGTGGTTTAGTGGATCACAATGGAGGAAAATTTACCATTGGTGAAACTGGAGTTTCCCTCATTGTCCCACCAAAAGCCATCCCAGAGGGAGACACTGAGGGCATCTTCATTGGGATTGTAAACCAAGAAAAGGAACACCCAAAGCTTGATGACAAGGAGTCCTTGCTAAGTCCAGTAGTCAAATGTGGTCCAAATGGACTCAAGTTTGAACGCCCTGTAATTCTTAGTTTGCCACACTGCGCTCAACTGGAGGATGGAGCTTGGAATTTGAAAGTCCAGTACAATGAGAGTGAAACAGGGACACCAGCTGGCTGGAAGCAGTTAATTGACATCAGCAAGCAAGATGGATCTGAGCCTTACTTTGCATTGCTTGAACCAAATATGGTTTACCTTATGGTAGATCATTTTACGAACTTTGCTGTAACAGGCCAACCTGCCAATCAAGCTAAGAAATGGGTACAAATTAAAGCCTATCTGACCCCACCAGAGGCTTGTGGGGACTGTATAGTGCGGGTGTACTGCGTTGGGGACACTTCAGCTCATTTAGAGATATTACATCAACAAGAAACTGAAAGGCTTGGAGGAGTAACAACCGATGCACATAAACCACTTCTCTTCCAAGAAGGAGGGGGTGATCTATTGGTCAATCTGAAATCTCACCATCGCGGCTGGACTAATATATCTGAGGATCTGAAGAAAATTCGCTACCGACACATATGGGAGGGCATTGAGCGTATGCCAAACTCTACTCTTGTTTTCGCCCCAAGAGATCAAAGTGTGACTCAGTTTCGAGCTTTGTTTGAAGTCAAGCAGGATTGTCAATTGGGGGACGACGTTGAAGTCAATGTTTCCATACCTGTCAAGCAAATGCAACCTACAAAAACCAACAAAGAAGTGGAGCAAACTTGTCCCTCGGTACCATCCACAAACATGTCGAGGAGAATAAGTGCAAATTCTCTTCAAGATGACACAACTATGACCTTGCTAGAAGCAGTTCAGATGAATAACACATCTTCTGGTTACTTCTCCATTGGTTTTGAGTCTTGGCCGTCAGGGGATAAGCTGACTCAAAGAATACGCAGTGAGCTGATTATTGCCCTTGATCCACCACATCCTAAGGCCGACTGGAGAGCACTGGCTGAAGGTCTTGGCTTTGAGCGAAAACATATAACATTCCTGGAAGCCTTAAAACCACCCGCATCTCCAACAGATGTCTTGCTGAATTTTTGCGAGCTCAAAAAATTTCCACCAAGTAAACTTGCAGAAGCACTTCGATCCTTGGGTCGTGATGATGCAACTGCTCTTCTGGAAAAACAGTTCGCAGTGAGGGAAACCGAGGTTTAG

Transcript

chr4Alt.g9540.t2

CGTTAAAATTTCAATAAAAACACCGATATAAGACTGAAACCAAACGGATCACTCACGGTTTTCAGTAAGCCACTCTGTAAAGGGAAAACACGAGGTCAGGATTCTACAGTCGAGAAGGAGACGACGAAATGCGCTCCAATTTTTGCCTTTTCAAAGCACAGCCGGTCCTTTCGATGCTGAAAGCTCTCACGGAAATGCTGTTTTCATCATTTTAAATCAAAGAAGGAAGAATCAAATTTATTATGGAAATCCGCTTTAGCAGGATCTCTCTGCTTTATTTGGTGCCTTTGGTGTGTGTCCTAAGTTCTTCGCGAAATCAAGCTCGGCTCGAAGACTGGAAAAGCCAAGAGGTGGTAAAACCTGAATTTATTGCTGAACCAAATGATGAATATGTTCAATCAAATTCTTCAGTTTCTTTGTTCTGTGAGGCAAGGTTTGTTTTCAAGCTTAAAATCAACTGCAGTGGAGGGCTGGTTCCTGAAATATGGCTGAAAAGTGAAGATGAAAATAATAAAACATTGCTCATTGTGGATGTCTCTCATACTACGATGAAAGCCAGGAACCTTGCAAGGGTATCTTGTGTTTGCTATGCTACTGGCTACAAAGGCTCTGTTTTAAAAAGTCGACCAGCACTGGTTGCATTAGCATATCTTAACAAGGACTTTGTGATTCTACCATCAAACAATGTCAGAGTTGCAAAAAACTCTATTTCTGTCTTGAGATGCAACCCTCCCACAGGTCTACCAATCCCAAACGTTTACTGGGAAAAAAATGATAAGCCTTTGAAGTCACTTGCAGATGAACGAATTGAGGAGACTAAGCAAGGAAACCTATCATTGCTTATCATAAGAGATGCAAAAGTTCAGGATTCTGGCCATTATCGATGTGTAGCATCAAATTTTGTGGGAAAAAGTAAAAGCCAAGCACTCAGGCTTAAGGTTTATGTTGACGGTGGTTGGTCTGAATGGCATGAATTCTTGGCTTGTTCTGCTAGTAAATGTGGTAAAGACAAACAGATGTTGAAGCGTTCTTGTAACAACCCTGATCCACAAAATGGTGGACAGTTTTGCTCTGGAGTAGGTTTCAAATTTAAGAAGTGTCGGGACGTTTGCCCAGCTTTGGAAATAATCTGCCCCAATGACACAAATGTTTTTAGTAACCACTCTGACACCGTGAAGAACTTCTCTTGGAGTAAGCCAAAGGTCATCAACCGAAAAAATGGAACAAATTTTTCTGTTGAAGTTGAGCCATCTTGGGCTGTACCCCCAGTTGATTTTAATACCACAGGGAGCACTGTAATTACATATTTTGCAAGACACAAGTATGGACAGACCATCAATTGCTCATTCACCATTACAGTGTTGAATGGCTCATCAAAGGCGTGCTTAAGCGAAGATTGTGAGAGTGCTACAACGCAGCAAGGCACAACTGTCTCCACTGAGTTCTCAGCTGACCGATCGGTGCTCTTAAGATTTTGGTTGAGTGCCAGGAAGTCACGCAAAGATTGTGAAAAACTAGCAGCACCTTCTGTTGAAAGATTTGAAAGGCATACAGAGGAAAGGTTTTCCTTGATAAATTGCGGCGATTCTCACAGGGAAACTGCAGACTTTCCTGGAAAACTTAGAGCTGGATCCCCCACCGTAGAAGGTGGAGAACATTTTGAGTTTTTGCCATCTTGGAAAGATGTTGTTGTTTCAGCACAAATCCCTGGCACCATTCCTGATGTAAAGGATAACGAAAATGCTCCATTAAAGGTGCCAAAGAATGAAGAAAAAGGAAGTAATAGAAGAAAAAACACCTCTATTGGTGGCAAATCCACAACATCAGAAATCTCTAGAATGTTGTGGAATATTACAAACCTCCCTGAGAACATTGATCCCAATATGGTTGCCTGTGGTTTAGTGGATCACAATGGAGGAAAATTTACCATTGGTGAAACTGGAGTTTCCCTCATTGTCCCACCAAAAGCCATCCCAGAGGGAGACACTGAGGGCATCTTCATTGGGATTGTAAACCAAGAAAAGGAACACCCAAAGCTTGATGACAAGGAGTCCTTGCTAAGTCCAGTAGTCAAATGTGGTCCAAATGGACTCAAGTTTGAACGCCCTGTAATTCTTAGTTTGCCACACTGCGCTCAACTGGAGGATGGAGCTTGGAATTTGAAAGTCCAGTACAATGAGAGTGAAACAGGGACACCAGCTGGCTGGAAGCAGTTAATTGACATCAGCAAGCAAGATGGATCTGAGCCTTACTTTGCATTGCTTGAACCAAATATGGTTTACCTTATGGTAGATCATTTTACGAACTTTGCTGTAACAGGCCAACCTGCCAATCAAGCTAAGAAATGGGTACAAATTAAAGCCTATCTGACCCCACCAGAGGCTTGTGGGGACTGTATAGTGCGGGTGTACTGCGTTGGGGACACTTCAGCTCATTTAGAGATATTACATCAACAAGAAACTGAAAGGCTTGGAGGAGTAACAACCGATGCACATAAACCACTTCTCTTCCAAGAAGGAGGGGGTGATCTATTGGTCAATCTGAAATCTCACCATCGCGGCTGGACTAATATATCTGAGGATCTGAAGAAAATTCGCTACCGACACATATGGGAGGGCATTGAGCGTATGCCAAACTCTACTCTTGTTTTCGCCCCAAGAGATCAAAGTGTGACTCAGTTTCGAGCTTTGTTTGAAGTCAAGCAGGATTGTCAATTGGGGGACGACGTTGAAGTCAATGTTTCCATACCTGTCAAGCAAATGCAACCTACAAAAACCAACAAAGAAGTGGAGCAAACTTGTCCCTCGGTACCATCCACAAACATGTCGAGGAGAATAAGTGCAAATTCTCTTCAAGATGACACAACTATGACCTTGCTAGAAGCAGTTCAGATGAATAACACATCTTCTGGTTACTTCTCCATTGGTTTTGAGTCTTGGCCGTCAGGGGATAAGCTGACTCAAAGAATACGCAGTGAGCTGATTATTGCCCTTGATCCACCACATCCTAAGGCCGACTGGAGAGCACTGGCTGAAGGTCTTGGCTTTGAGCGAAAACATATAACATTCCTGGAAGCCTTAAAACCACCCGCATCTCCAACAGATGTCTTGCTGAATTTTTGCGAGCTCAAAAAATTTCCACCAAGTAAACTTGCAGAAGCACTTCGATCCTTGGGTCGTGATGATGCAACTGCTCTTCTGGAAAAACAGTTCGCAGTGAGGGAAACCGAGGTTTAGTTGACATGCTGTAAACGGGTCAGGGATGGCCAATGAGGAGAGATTAAGATTACTATACCATGGCACTGAGATCAATGGAGTGCACTCCATGGACGATCGTAGTGGGGTACACTACAAAGACTAGTTTTTGTGCATGAGAACTGGTGGGAACCCTGTGCTTCCCCTTCTCACTAAGCCTTTGTAGTCCTTGAGGTGAATAGTGGTAAAATACCTTGGAACTTGTTCACCCTCACAGGAAGCTTATTTTTCCAAAAAAGAAAATGGCAAATTTCAGGATGGTGCCTCCACAGGAGTTCACTATGATGTGTATGAAAGTAAAGGGAATTTAATGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T2Z5	Netrin receptor UNC5C OS=Gallus gallus OX=9031 GN=UNC5C PE=2 SV=1
Q761X5	Netrin receptor UNC5C OS=Rattus norvegicus OX=10116 GN=Unc5c PE=1 SV=1
O08747	Netrin receptor UNC5C OS=Mus musculus OX=10090 GN=Unc5c PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00791 all species →	ZU5	ZU5 domain	Family	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF17217 all species →	UPA	UPA domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000906 all species →	Domain	ZU5 domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR037936 all species →	Family	Netrin receptor UNC5	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR033772 all species →	Domain	UPA domain	Interproscan
IPR003410 all species →	Domain	HYR domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12582 all species →	NETRIN RECEPTOR UNC5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005042 all species →	Molecular Function	netrin receptor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038007 all species →	Biological Process	netrin-activated signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g9540.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g9540.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.