Gene detail

Detailed information of g9550.t2 in Acropora digitifera

Genomic Location: chr4Alt:26143258...26162599
NR annotation: XP_029187700.2, piwi-like protein 1 isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g9550.t2

ATGGCAGGTCGCGGGGGAAGAGGTGCCGCTCTTCTTCAGGCATTAGAAAAGCCGGCCAGACCCCCTGGGCAGGCAGGACAAAATGGACAGCAGAATGTCCAACCATCTCAGCAACAGGGTCCACCTAAACCTGGACCCGATCAGCATGGTCAGAGACAATCCTACCCACAACAGTATCCTGATCAGCATGGTCGAGGACAACCCTACCCACAACAGTATCCAGCGCAACCTTATCATCAACGTCCCATGCATCCTGCGCATCCATATCAGCAGTACCAACAGCCACAGCCGCCAACTCATTTTCAGCAGATGCCTGCAGGGCGAGGTCAGATGTACGACCGAGGTGGGGCAATGTATGGCCAAGTCCCAGGGTATGGCCAACAACCTGTGGCTGCCCCTCCACCACAGCAAGTGCCATATGGAAGGGGTGCCCAAATGGCTGCATATGGCAGAGGGGCTCCTTACGGACGAGGTGCCCAGCAGCCTGTACAATCAGGCAGACAGCCTTTGCCTCCGGCTCAAGAACAACGCACTTCACCTCCTCAAGCTCAACAACAGAGTCCTGAGGTTCCAGTATCACAGATGGCCCAAATGAGAGTGAGGGAGGATGTTGCAACAACCCAAACAGGGGAGAAAGGAACAGCAGGAAAACCGACTTCTCTGAGTTGTAACTTTATACCAATCAGATTTGTTGAGCAAAAAGTGTACCAGTACCATGTGTCTTTCAGCCCAGAAATCGACAGTAGAAAGGAACGATGTAGACTACTGAGTGCCCACAGGGATTTATTAGGATCAGCCAGAGCCTTTGATGGAAGTATTCTTTTCCTTCCAAAACAACTAGAAGGACCAGCAACTGTTTTGGAATCAGAAAGGAAGACTGATGGCTCAAAAGTCACAGTAACAGTCACTTTAACACGAATAGTTCCTCCAGACGATTGCTTGCAACTTCTCAACATTATATTCAGAAGAGTTATGAAACACCTCCAGCTGAAACAGGTTGGGCGGTATTATTATGATCCAAACAGACCAGCTGCTATTCCACAACATAAGATAGAGCTTTGGCCTGGATATATTACTTCAATTCAGTGCTATGAAGGTGGTATGATGCTTCTGTGTGATGTGTCTCACAGGCTTCTAAGAACAGAAACAGTCTATGATTTTATTTATGAGTTGTACCACAGAAAGAGGGATCGCTTTGAGGAAGAAACAAAGAAGCAGCTTGTTGGAAACATTGTTTTGACAAGGTATAACAACAAGACATACAGAATTGATGATGTAGCCTTCGATCAAAACCCAAAGTGCACATTTACATTTCACACTGGAGAGCAGATGTCATATTTAGACTATTACAGAAATGTCTATAGCAAAGAAATACAAGATCCTGAGCAGCCACTGCTTGTTCACAGACCTAAAGATAAAGAAGTCCAAAGGGGTAAACCAGGACTTGTCTGTTTGATCCCTGAGCTTTGCTACATCACTGGACTCACAGATGCTGTGAGGCAAGACTTCAGAGTGATGAAGGACATCGCAGCACACACAAGAGTCAGCCCAATGCAGCGACAGCAAGCGATGATGAAGTTTATTGACAACATTAACTCTTCCCCAGAGGCTATAAGTGAGCTGTCATCTTGGGGAATTCAACTAGACCAAGGAATGCTTAGAACAGAGGGACGGCAACTACCTCTAGAAAAGATTTTCCTTGGGAGCACCTCCTTTCAATCCAGTCCTCAAGCTGACTGGGGCCAGCAAGCTGTTAAGGAGCAAGTGATTACCCCTGTTCCACTCCACAAATGGGTTGTGTTCTTTGTCAACAGGGACAAGAGCAAGGCTCTAGATTTCATCAACATGATGAGAAAAGTAACCCCATCTATGGGCATTCAGGTGAATGATCCCTTGATAATTGACCTGCCAAACGACAGAACAGAAACGTTTCTGAGAAGCATAAGGGAGAACTTGACCCCCCAGGTTCAAATGGTGGTTGTGATATTCCCTACATCCCGGGATGATCGTTACTCTGCCGTAAAGAAACTTTGCTGTGTTGAAAGTCCTGTTCCCTCACAGGTTATCAATGCCAAAACAATTTCACAGCAAAACAAGCTTAGGAGTGTTACCCAGAAAATAGCTTTACAGATCAACTGTAAACTTGGTGGAGAACTCTGGGCCTTAGACATACCGCTGAAAAGTTTGATGGTGATCGGCATTGATGTCTACCATGATGCCTCCCGTGGTGGGCGGTCTGTTGGAGGGTTTGTCGCCAGTATGAATAAAAGCCTCACAAGGTGGTATTCAAGAGTGTGCTTCCAATCCCCTGGACAGGAGCTCATTGATGGACTAAAAATGGCCCTCACTGCCTCACTGAAAAAGTATCATGAGGTGAACCAGACATTGCCTGATCGCATTGTTGTTTACCGCGACGGCGTGGGGGATGGCCAGCTTAGAACTGTGGCTGGTTACGAGGTCCAGCAACTGTCTGAGTGTTTCACTCTCTTTGGTGAAAGATACTCGCCCAAGATGGCAGTGGTGATTGTGTCTAAGAGAATCAATGCCAGGATCTTTGCAGCTCAGGGTCAAGGGCCTATTCCTAAGCTGGACAATCCTGGCCCTGGAGCAGTTTTGGATCATACCATCACACGGAAAGACTGGTATGACTTTTATCTGGTCAGCCAACACGTTCGCCAAGGGACAGTCACCCCAACACATTACATTGTTGTCCACGACAAATCAGAACTAAAGCCCGACTATATGCAAAGATTGTCGTACAAGCTGACACATTTATATTACAACTGGCCCGGCACCGTCAGAGTACCGGCCCCTTGTCAGTATGCTCACAAGTTGGCGTACCTGGTCGGACAGAATATCCATAACGAGCCTTCGCACGATCTGTCTGATCGTCTGTTTTTCTTATAA

Transcript

chr4Alt.g9550.t2

TGCACTGTGCGAAGGGAAATAGAATTCAAACGGCTGTTTAATTTTTAGCAAGTTTTAGTGTTTTAAGCGATTTTAAGGTTTTAGCTCCTTATAGCAAAAGAATGGCAGGTCGCGGGGGAAGAGGTGCCGCTCTTCTTCAGGCATTAGAAAAGCCGGCCAGACCCCCTGGGCAGGCAGGACAAAATGGACAGCAGAATGTCCAACCATCTCAGCAACAGGGTCCACCTAAACCTGGACCCGATCAGCATGGTCAGAGACAATCCTACCCACAACAGTATCCTGATCAGCATGGTCGAGGACAACCCTACCCACAACAGTATCCAGCGCAACCTTATCATCAACGTCCCATGCATCCTGCGCATCCATATCAGCAGTACCAACAGCCACAGCCGCCAACTCATTTTCAGCAGATGCCTGCAGGGCGAGGTCAGATGTACGACCGAGGTGGGGCAATGTATGGCCAAGTCCCAGGGTATGGCCAACAACCTGTGGCTGCCCCTCCACCACAGCAAGTGCCATATGGAAGGGGTGCCCAAATGGCTGCATATGGCAGAGGGGCTCCTTACGGACGAGGTGCCCAGCAGCCTGTACAATCAGGCAGACAGCCTTTGCCTCCGGCTCAAGAACAACGCACTTCACCTCCTCAAGCTCAACAACAGAGTCCTGAGGTTCCAGTATCACAGATGGCCCAAATGAGAGTGAGGGAGGATGTTGCAACAACCCAAACAGGGGAGAAAGGAACAGCAGGAAAACCGACTTCTCTGAGTTGTAACTTTATACCAATCAGATTTGTTGAGCAAAAAGTGTACCAGTACCATGTGTCTTTCAGCCCAGAAATCGACAGTAGAAAGGAACGATGTAGACTACTGAGTGCCCACAGGGATTTATTAGGATCAGCCAGAGCCTTTGATGGAAGTATTCTTTTCCTTCCAAAACAACTAGAAGGACCAGCAACTGTTTTGGAATCAGAAAGGAAGACTGATGGCTCAAAAGTCACAGTAACAGTCACTTTAACACGAATAGTTCCTCCAGACGATTGCTTGCAACTTCTCAACATTATATTCAGAAGAGTTATGAAACACCTCCAGCTGAAACAGGTTGGGCGGTATTATTATGATCCAAACAGACCAGCTGCTATTCCACAACATAAGATAGAGCTTTGGCCTGGATATATTACTTCAATTCAGTGCTATGAAGGTGGTATGATGCTTCTGTGTGATGTGTCTCACAGGCTTCTAAGAACAGAAACAGTCTATGATTTTATTTATGAGTTGTACCACAGAAAGAGGGATCGCTTTGAGGAAGAAACAAAGAAGCAGCTTGTTGGAAACATTGTTTTGACAAGGTATAACAACAAGACATACAGAATTGATGATGTAGCCTTCGATCAAAACCCAAAGTGCACATTTACATTTCACACTGGAGAGCAGATGTCATATTTAGACTATTACAGAAATGTCTATAGCAAAGAAATACAAGATCCTGAGCAGCCACTGCTTGTTCACAGACCTAAAGATAAAGAAGTCCAAAGGGGTAAACCAGGACTTGTCTGTTTGATCCCTGAGCTTTGCTACATCACTGGACTCACAGATGCTGTGAGGCAAGACTTCAGAGTGATGAAGGACATCGCAGCACACACAAGAGTCAGCCCAATGCAGCGACAGCAAGCGATGATGAAGTTTATTGACAACATTAACTCTTCCCCAGAGGCTATAAGTGAGCTGTCATCTTGGGGAATTCAACTAGACCAAGGAATGCTTAGAACAGAGGGACGGCAACTACCTCTAGAAAAGATTTTCCTTGGGAGCACCTCCTTTCAATCCAGTCCTCAAGCTGACTGGGGCCAGCAAGCTGTTAAGGAGCAAGTGATTACCCCTGTTCCACTCCACAAATGGGTTGTGTTCTTTGTCAACAGGGACAAGAGCAAGGCTCTAGATTTCATCAACATGATGAGAAAAGTAACCCCATCTATGGGCATTCAGGTGAATGATCCCTTGATAATTGACCTGCCAAACGACAGAACAGAAACGTTTCTGAGAAGCATAAGGGAGAACTTGACCCCCCAGGTTCAAATGGTGGTTGTGATATTCCCTACATCCCGGGATGATCGTTACTCTGCCGTAAAGAAACTTTGCTGTGTTGAAAGTCCTGTTCCCTCACAGGTTATCAATGCCAAAACAATTTCACAGCAAAACAAGCTTAGGAGTGTTACCCAGAAAATAGCTTTACAGATCAACTGTAAACTTGGTGGAGAACTCTGGGCCTTAGACATACCGCTGAAAAGTTTGATGGTGATCGGCATTGATGTCTACCATGATGCCTCCCGTGGTGGGCGGTCTGTTGGAGGGTTTGTCGCCAGTATGAATAAAAGCCTCACAAGGTGGTATTCAAGAGTGTGCTTCCAATCCCCTGGACAGGAGCTCATTGATGGACTAAAAATGGCCCTCACTGCCTCACTGAAAAAGTATCATGAGGTGAACCAGACATTGCCTGATCGCATTGTTGTTTACCGCGACGGCGTGGGGGATGGCCAGCTTAGAACTGTGGCTGGTTACGAGGTCCAGCAACTGTCTGAGTGTTTCACTCTCTTTGGTGAAAGATACTCGCCCAAGATGGCAGTGGTGATTGTGTCTAAGAGAATCAATGCCAGGATCTTTGCAGCTCAGGGTCAAGGGCCTATTCCTAAGCTGGACAATCCTGGCCCTGGAGCAGTTTTGGATCATACCATCACACGGAAAGACTGGTATGACTTTTATCTGGTCAGCCAACACGTTCGCCAAGGGACAGTCACCCCAACACATTACATTGTTGTCCACGACAAATCAGAACTAAAGCCCGACTATATGCAAAGATTGTCGTACAAGCTGACACATTTATATTACAACTGGCCCGGCACCGTCAGAGTACCGGCCCCTTGTCAGTATGCTCACAAGTTGGCGTACCTGGTCGGACAGAATATCCATAACGAGCCTTCGCACGATCTGTCTGATCGTCTGTTTTTCTTATAAGTCGTTGTGGTCGTCACGAGTGCGCAAGCACTGTTATTGGTGCCTCTCCTTGTCCTTGTCAAGATTTTATCAAGAACTACCGTTAGTTTCACTCACGGCCATCGGTCTTTTCGTCTCTCCGGTGAAATGAACTTGCGTGTTAGAGTTTGTTCCGTTCGTTTCGATATTTATTTATAATTAGGTTATAATGACGAATATGTTTCAATGATCGAGTAATTCCTAAATTTGAAGGTTAAATTTGTTGTCGATGACAGCATTTTGTATTTTTTCTATGACGCTTTCAAATTACTTCAGTGCATGTAAAATAAAACTGAAATGAGTGATTGAAGAAAATAACCATAAATATACCTTCGTTAACCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2CEI6	Piwi-like protein 2 OS=Danio rerio OX=7955 GN=piwil2 PE=1 SV=2
Q96J94	Piwi-like protein 1 OS=Homo sapiens OX=9606 GN=PIWIL1 PE=1 SV=1
Q9JMB7	Piwi-like protein 1 OS=Mus musculus OX=10090 GN=Piwil1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02170 all species →	PAZ	PAZ domain	Domain	Interproscan
PF08699 all species →	ArgoL1	Argonaute linker 1 domain	Domain	Interproscan
PF02171 all species →	Piwi	Piwi domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR003100 all species →	Domain	PAZ domain	Interproscan
IPR014811 all species →	Domain	Argonaute, linker 1 domain	Interproscan
IPR003165 all species →	Domain	Piwi domain	Interproscan
IPR036085 all species →	Homologous_superfamily	PAZ domain superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0031047 all species →	Biological Process	regulatory ncRNA-mediated gene silencing	Interproscan
GO:0034584 all species →	Molecular Function	piRNA binding	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02156	AUB, PIWI; aubergine	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g9550.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.