Gene detail

Detailed information of g9596.t1 in Acropora digitifera

Genomic Location: chr4Alt:26610034...26616596
NR annotation: XP_044175307.1, LOW QUALITY PROTEIN: uncharacterized protein LOC122958456 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g9596.t1

ATGATCAATGGAAATAGAGCCGAATGGGATTGCACAATGCTGTTTTATGCTATCCTGTTTTCCGATCGTATTGGGTGTAATCTGGATGCAGTAGTGCGGTCAAACGTAGATGATCTGAGAGAATACCGTAACGAAGTTTTTGCTCATTTGCCTCGAGGCCAGATGTCTAGGCTAAAGTTTCAAACAGAAATCGCCAAAGTTCAGACTGCATTTGAAGCTCTTGGCCTGTCCACTGCAAAGATCCAAGAAATCAGGAATCAAGTAAATTTTCCCACCAGGCATTTGATCCAGTGCTTAGAAGAAATCAAAGTCCTTAATGATCAATTGCTGAATGAGATCAAGCCCTTTTGCAAGCTTCCGCCCAAGCCTTCGCACCATGTTGCCGCGCGAAAGGATGATGTGGCTAAGATAACTCAAGAGTTAAAACAACTAAAAGAGAACAACAAGAGCCAACTAAGCGTCCTCTACATCTCAGGAAATCCTGGAAGTGGCAAATCTCAGTTGGCTGGCCTAGTAGCAGATCAAATTTTCAAGGAAAGCACAGATGCATTTGTCATGACTTTGGATGCTTCAAACCTTGAGAGGCTTCTAGATTCGTATGTCTCTTTTGCTCGACATCTCAAGTGTTCAGAGTATACAGTTACCAATGCTCTGAATAACTTTGGCAAAGACCTGAAGACGGAGGAGAAGATCGCTTACATAAAGTCTTTAGCTGGTACCAACGTGCAGCTTTACGCATCGTGGCTGTTGTTAGTTGACAATGTCGTCAGCATACCTGAGATGAATGCTCACTTGCCAGACACGAGAAACAGCTGCTGGAGTAAAGGTCAATTGCTGATCACAACTCAGGACACCACTTCTATCCCTCCAGACAACACTTTCATTAAGCAAATGTCTGTAAGCAAGGGCATGGCGCCATCTGATGCCACCTCCTTATTGGCCACCATCTCCGGTATCGCTGACGATGAGACAACAGCTGAAGAAGTCGCAAATGCATTAGATTATCAACCTCTTGCCTTAGCAAGCGCCGCTACGTTTGTAAAACAACTTTGCGACACTAAATCATCATCAAACTTGGGCTGGAGAGACTTTCTCCAGAAAATTGACGAAGGCCAACTTAAAAACACTCAGACCTTTCTTTCAAACACAAATGCAAGTTATCCATATTCTATGACCACTGCGATTGCATTAGCCGTGGAAAAGTCGATGTTATCCAACATAGTTCTAAAACACACATTCAATATTATTGCTCTTTGTGCGCCACAACCATTAAACCTTGACATTGTAACCAACTACATTCAGAAGGTCGAGGAGAATAGCGATATGAACACAGAAGGCCAATTTAACGACAAAGATGTCATTGATTTGAGGATTCGCAAGAGCTCGCTCCTGTTACTTGAAGAAGACAACGGCGAAAGCTACGTTCGCATACATCAAGTTGTAAGAGATGTCATCCAACTTCTTATTAAGCAGCATTGGGAGACGCAACGTTTTGAAGTAGTTCATGTGTCCATTTTGTCTTTGAATCAATTCATAGTAGACAGGAAAACTGACGATTATTCTGGTAATGGAGTTAGGTTACTAGTTCCTCATTTGAGATTCCTTTTAAAGCAAGTTGAAGCTAGTTTCGAAGAAAATGACACATCTGAAGCAATCAAAAATAAGATTTTTAACTTGAAAGATTATTCAAGTTATTTCATGGTCTTTGGTGAGATTTGTTGTGTACATTTCGACCTGAAAGCAGCAAAACGCTTTGCTAGTTTAGCTCTTAAGTTAATTTCCCACGATAGTATGCTTTACAACACGTATGCAGCAGACACCCACTCTCTCATGGGCCAAGTACTTTTCCAGATGGGAACGTTTGACGAGGGAAAACGTCACTTCGAACGTTCTCTCGCTCTTCAGCTTCAATTGTTAGGTTCTGAACATCCTAATGTCGCAAATTCCTACAACAACTTAGCTAATGTACTTTGTGATCAAGGTGACCTGAAGAAAGCAAAGGAGTATTATGAGCGTGCTCTTGCTATTAGGCAACAAACGTTGGGGCCTCAACATCCTGATCTCGCAGATTCTTATAACAACTTAGCTAATGTACTTCATGATCACGATGACCTGAGACAAGCAAAGAAGTATCATAAGCGTGCTCTTGCTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCAAGTTCTTATAACAACTTAGCTATTGTACTTGGTGACCAAGGTGACCTGAAGCAAGCAAAGGAGTATCATGAGCATGCTCTTGTTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCAAGTTCTTACAACAACTTAGCTATTATACTGCGTAATCAAGGTGACCTGAAGGAAGCAAAGAAGTATCATGAGCGTGCTCTTGCTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCAACTTCTTGTAACAACTTAGCTATTGTACTTGGTGATCAAGGTGACCTGAAGGAAGCAAAGAAGTATCATGAGCGTGCTCTTGCTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCAGATTCTTATAACAACTTAGCTTCTGTACTTAAAGAACAAGGTGACCTGAAACAAGCAAAGGAGTATCATGAGCATTTGGATAACGAATCGTCTGACTCACGTGGAATCCCAGCTCTGCAAAAATGTTTGGGTATAGTATTTACCTCAAAATGTGCTCGTGGAGTCGAGTTTGGTTTGCTTACAAGGAACTCGCAAAACCCGTGCTCAAGTTTCGAACGCAATACCTACCTATTTACAGGAACTGTCGATGAATTCAACGATGTGAAAAGTTGGGAAATGGCTGAAATTGGAAATAAACCTGAGTTGCGAAGCAGCTAA

Transcript

chr4Alt.g9596.t1

TTTCATTACCACTAACGAGATAACGGACGGTCTGAGAACAATCTTCAAACAGGAATGGGACAACCGTTACGCAACTACACTAGGAGAATGGAAAGATGAGCCCAAAAACGGACAAGACTTCAAAAACGGGGAATCCGCAGGAAAGCAGAAAGGAAATAAAAAACTATTAACAACCATGATCAATGGAAATAGAGCCGAATGGGATTGCACAATGCTGTTTTATGCTATCCTGTTTTCCGATCGTATTGGGTGTAATCTGGATGCAGTAGTGCGGTCAAACGTAGATGATCTGAGAGAATACCGTAACGAAGTTTTTGCTCATTTGCCTCGAGGCCAGATGTCTAGGCTAAAGTTTCAAACAGAAATCGCCAAAGTTCAGACTGCATTTGAAGCTCTTGGCCTGTCCACTGCAAAGATCCAAGAAATCAGGAATCAAGTAAATTTTCCCACCAGGCATTTGATCCAGTGCTTAGAAGAAATCAAAGTCCTTAATGATCAATTGCTGAATGAGATCAAGCCCTTTTGCAAGCTTCCGCCCAAGCCTTCGCACCATGTTGCCGCGCGAAAGGATGATGTGGCTAAGATAACTCAAGAGTTAAAACAACTAAAAGAGAACAACAAGAGCCAACTAAGCGTCCTCTACATCTCAGGAAATCCTGGAAGTGGCAAATCTCAGTTGGCTGGCCTAGTAGCAGATCAAATTTTCAAGGAAAGCACAGATGCATTTGTCATGACTTTGGATGCTTCAAACCTTGAGAGGCTTCTAGATTCGTATGTCTCTTTTGCTCGACATCTCAAGTGTTCAGAGTATACAGTTACCAATGCTCTGAATAACTTTGGCAAAGACCTGAAGACGGAGGAGAAGATCGCTTACATAAAGTCTTTAGCTGGTACCAACGTGCAGCTTTACGCATCGTGGCTGTTGTTAGTTGACAATGTCGTCAGCATACCTGAGATGAATGCTCACTTGCCAGACACGAGAAACAGCTGCTGGAGTAAAGGTCAATTGCTGATCACAACTCAGGACACCACTTCTATCCCTCCAGACAACACTTTCATTAAGCAAATGTCTGTAAGCAAGGGCATGGCGCCATCTGATGCCACCTCCTTATTGGCCACCATCTCCGGTATCGCTGACGATGAGACAACAGCTGAAGAAGTCGCAAATGCATTAGATTATCAACCTCTTGCCTTAGCAAGCGCCGCTACGTTTGTAAAACAACTTTGCGACACTAAATCATCATCAAACTTGGGCTGGAGAGACTTTCTCCAGAAAATTGACGAAGGCCAACTTAAAAACACTCAGACCTTTCTTTCAAACACAAATGCAAGTTATCCATATTCTATGACCACTGCGATTGCATTAGCCGTGGAAAAGTCGATGTTATCCAACATAGTTCTAAAACACACATTCAATATTATTGCTCTTTGTGCGCCACAACCATTAAACCTTGACATTGTAACCAACTACATTCAGAAGGTCGAGGAGAATAGCGATATGAACACAGAAGGCCAATTTAACGACAAAGATGTCATTGATTTGAGGATTCGCAAGAGCTCGCTCCTGTTACTTGAAGAAGACAACGGCGAAAGCTACGTTCGCATACATCAAGTTGTAAGAGATGTCATCCAACTTCTTATTAAGCAGCATTGGGAGACGCAACGTTTTGAAGTAGTTCATGTGTCCATTTTGTCTTTGAATCAATTCATAGTAGACAGGAAAACTGACGATTATTCTGGTAATGGAGTTAGGTTACTAGTTCCTCATTTGAGATTCCTTTTAAAGCAAGTTGAAGCTAGTTTCGAAGAAAATGACACATCTGAAGCAATCAAAAATAAGATTTTTAACTTGAAAGATTATTCAAGTTATTTCATGGTCTTTGGTGAGATTTGTTGTGTACATTTCGACCTGAAAGCAGCAAAACGCTTTGCTAGTTTAGCTCTTAAGTTAATTTCCCACGATAGTATGCTTTACAACACGTATGCAGCAGACACCCACTCTCTCATGGGCCAAGTACTTTTCCAGATGGGAACGTTTGACGAGGGAAAACGTCACTTCGAACGTTCTCTCGCTCTTCAGCTTCAATTGTTAGGTTCTGAACATCCTAATGTCGCAAATTCCTACAACAACTTAGCTAATGTACTTTGTGATCAAGGTGACCTGAAGAAAGCAAAGGAGTATTATGAGCGTGCTCTTGCTATTAGGCAACAAACGTTGGGGCCTCAACATCCTGATCTCGCAGATTCTTATAACAACTTAGCTAATGTACTTCATGATCACGATGACCTGAGACAAGCAAAGAAGTATCATAAGCGTGCTCTTGCTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCAAGTTCTTATAACAACTTAGCTATTGTACTTGGTGACCAAGGTGACCTGAAGCAAGCAAAGGAGTATCATGAGCATGCTCTTGTTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCAAGTTCTTACAACAACTTAGCTATTATACTGCGTAATCAAGGTGACCTGAAGGAAGCAAAGAAGTATCATGAGCGTGCTCTTGCTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCAACTTCTTGTAACAACTTAGCTATTGTACTTGGTGATCAAGGTGACCTGAAGGAAGCAAAGAAGTATCATGAGCGTGCTCTTGCTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCAGATTCTTATAACAACTTAGCTTCTGTACTTAAAGAACAAGGTGACCTGAAACAAGCAAAGGAGTATCATGAGCATTTGGATAACGAATCGTCTGACTCACGTGGAATCCCAGCTCTGCAAAAATGTTTGGGTATAGTATTTACCTCAAAATGTGCTCGTGGAGTCGAGTTTGGTTTGCTTACAAGGAACTCGCAAAACCCGTGCTCAAGTTTCGAACGCAATACCTACCTATTTACAGGAACTGTCGATGAATTCAACGATGTGAAAAGTTGGGAAATGGCTGAAATTGGAAATAAACCTGAGTTGCGAAGCAGCTAAGCGGTCCTTATGGTCAGCCTCCGGGAACCCATGGGGAATGGTACAGAATTGGTATTTCTTTTTTCCCCGCGAGGGGAGGGGAGTTGTTTAGCTTTGGAAACGATGACAGTCGGAAACGACTTCACTAGACCATGGGGGCATACCCACGGGATTTGTTCGAGGCAGTGCGACAGGCAAGGTGAAAAGTGCTTTACCTGGTACCATGGTTGATGTGTGAAAATGAGCAAAAAGCGTGCAAAAAAATTGGATACACTTGTACGTTGTTTTTGCCAATGAAAAGTAAATATTATATATATTATATATATATATTATTAAATATTCCTTTGTATT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13374 all species →	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR051787 all species →	Family	Effector and Ciliary Development-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g9596.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g9596.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

38TPM > 0

1Conditions

22.0Max TPM

5.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	38	5.69	22.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	22.05
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	21.73
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	21.05
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	15.78
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	11.40
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	8.02
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	6.31
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	6.17
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	6.09
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	5.98
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	5.90
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	5.75
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	5.62
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	5.55
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	5.17
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	5.11
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	5.00
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	4.95
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	4.87
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	4.25
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	4.04
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	3.96
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	3.93
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	3.89
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	3.87
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	3.57
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	3.38
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	3.12
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	2.99
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	2.79
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	1.62
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	1.62
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	1.36
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	1.22
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	1.15
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	1.00
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	0.86
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	0.73
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.