Gene detail

Detailed information of g960.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047138033.1, uncharacterized protein LOC100208856 isoform X2 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60241	Adhesion G protein-coupled receptor B2 OS=Homo sapiens OX=9606 GN=ADGRB2 PE=1 SV=2
Q8CGM1	Adhesion G protein-coupled receptor B2 OS=Mus musculus OX=10090 GN=Adgrb2 PE=1 SV=2
Q60519	Semaphorin-5B OS=Mus musculus OX=10090 GN=Sema5b PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000042 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000311 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001047 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002757 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005049 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006003 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006091 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007299 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0021507 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0024794 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16413 all species →	Mlh1_C	DNA mismatch repair protein Mlh1 C-terminus	Domain	Interproscan
PF13589 all species →	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF01119 all species →	DNA_mis_repair	DNA mismatch repair protein, C-terminal domain	Family	Interproscan
PF19303 all species →	Anticodon_3	Anticodon binding domain of methionyl tRNA ligase	Domain	Interproscan
PF09334 all species →	tRNA-synt_1g	tRNA synthetases class I (M)	Family	Interproscan
PF10510 all species →	PIG-S	Phosphatidylinositol-glycan biosynthesis class S protein	Family	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF14223 all species →	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF16017 all species →	BTB_3	BTB/POZ domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF00040 all species →	fn2	Fibronectin type II domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF01221 all species →	Dynein_light	Dynein light chain type 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014762 all species →	Conserved_site	DNA mismatch repair, conserved site	Interproscan
IPR032189 all species →	Domain	DNA mismatch repair protein Mlh1, C-terminal	Interproscan
IPR002099 all species →	Family	DNA mismatch repair protein MutL/Mlh/PMS	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR038973 all species →	Family	DNA mismatch repair protein MutL/Mlh/Pms-like	Interproscan
IPR013507 all species →	Domain	DNA mismatch repair protein, S5 domain 2-like	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR052510 all species →	Family	Oomycete RxLR Effector	Interproscan
IPR023457 all species →	Family	Methionine-tRNA synthetase, type 2	Interproscan
IPR041872 all species →	Domain	Methionyl-tRNA synthetase, anticodon-binding domain	Interproscan
IPR009080 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR015413 all species →	Domain	Methionyl/Leucyl tRNA synthetase	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR033911 all species →	Domain	Methioninyl-tRNA synthetase core domain	Interproscan
IPR023696 all species →	Homologous_superfamily	Ureohydrolase domain superfamily	Interproscan
IPR019540 all species →	Family	Phosphatidylinositol-glycan biosynthesis class S protein	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR039885 all species →	Domain	BTBD10/KCTD20, BTB/POZ domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036943 all species →	Homologous_superfamily	Fibronectin type II domain superfamily	Interproscan
IPR000562 all species →	Domain	Fibronectin type II domain	Interproscan
IPR052065 all species →	Family	Complement and asymmetry regulator	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan
IPR001007 all species →	Domain	VWFC domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR050958 all species →	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR037177 all species →	Homologous_superfamily	Dynein light chain superfamily	Interproscan
IPR001372 all species →	Family	Dynein light chain, type 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10073 all species →	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	Interproscan
PTHR45895 all species →	INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR43326 all species →	METHIONYL-TRNA SYNTHETASE	Interproscan
PTHR21072 all species →	GPI TRANSAMIDASE COMPONENT PIG-S	Interproscan
PTHR42648 all species →	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR22906 all species →	PROPERDIN	Interproscan
PTHR45080 all species →	CONTACTIN 5	Interproscan
PTHR11886 all species →	DYNEIN LIGHT CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0032300 all species →	Cellular Component	mismatch repair complex	Interproscan
GO:0032389 all species →	Cellular Component	MutLalpha complex	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan
GO:0004825 all species →	Molecular Function	methionine-tRNA ligase activity	Interproscan
GO:0006431 all species →	Biological Process	methionyl-tRNA aminoacylation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0016255 all species →	Biological Process	attachment of GPI anchor to protein	Interproscan
GO:0042765 all species →	Cellular Component	GPI-anchor transamidase complex	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0008046 all species →	Molecular Function	axon guidance receptor activity	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0043025 all species →	Cellular Component	neuronal cell body	Interproscan
GO:0050808 all species →	Biological Process	synapse organization	Interproscan
GO:0007017 all species →	Biological Process	microtubule-based process	Interproscan
GO:0030286 all species →	Cellular Component	dynein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05291	PIGS; GPI-anchor transamidase subunit S	-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala
K08734	MLH1; DNA mismatch repair protein MLH1	-	DNA repair and recombination proteins	ko03400	deepkoala
K10412	DNAL4; dynein axonemal light chain 4	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.