Detailed information of g963.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_022784843.1, flavin reductase (NADPH)-like isoform X2 [Stylophora pistillata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

 Sequence
Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7SIB3Collagen alpha-2(IV) chain (Fragment) OS=Bos taurus OX=9913 GN=COL4A2 PE=1 SV=1
P17140Collagen alpha-2(IV) chain OS=Caenorhabditis elegans OX=6239 GN=let-2 PE=1 SV=2
P27393Collagen alpha-2(IV) chain OS=Ascaris suum OX=6253 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000015 (this species only) · gene tree & orthology
Orthogroup (gene family)OG0001438 (this species only) · gene tree & orthology
Orthogroup (gene family)OG0001701 (this species only) · gene tree & orthology
Orthogroup (gene family)OG0003679 (this species only) · gene tree & orthology
Orthogroup (gene family)OG0006638 (this species only) · gene tree & orthology
Orthogroup (gene family)OG0011911 (this species only) · gene tree & orthology
Orthogroup (gene family)OG0012018 (this species only) · gene tree & orthology
Orthogroup (gene family)OG0016703 (this species only) · gene tree & orthology
Orthogroup (gene family)OG0026263 (this species only) · gene tree & orthology
Orthogroup (gene family)OG0027587 (this species only) · gene tree & orthology
Orthogroup (gene family)OG0028165 (this species only) · gene tree & orthology
Orthogroup (gene family)OG0061757 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00092
all species →
VWAvon Willebrand factor type A domainDomainInterproscan
PF01413
all species →
C4C-terminal tandem repeated domain in type 4 procollagenDomainInterproscan
PF01391
all species →
CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF00250
all species →
ForkheadForkhead domainDomainInterproscan
PF00001
all species →
7tm_17 transmembrane receptor (rhodopsin family)FamilyInterproscan
PF13460
all species →
NAD_binding_10NAD(P)H-binding DomainInterproscan
PF00069
all species →
PkinaseProtein kinase domainDomainInterproscan
PF00078
all species →
RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00665
all species →
rveIntegrase core domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016187
all species →
Homologous_superfamilyC-type lectin foldInterproscan
IPR002035
all species →
Domainvon Willebrand factor, type AInterproscan
IPR001442
all species →
DomainCollagen IV, non-collagenousInterproscan
IPR036465
all species →
Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR008160
all species →
RepeatCollagen triple helix repeatInterproscan
IPR050525
all species →
FamilyExtracellular Matrix Assembly and OrganizationInterproscan
IPR036954
all species →
Homologous_superfamilyCollagen IV, non-collagenous domain superfamilyInterproscan
IPR047119
all species →
FamilyForkhead box protein N2/3-likeInterproscan
IPR036390
all species →
Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR036388
all species →
Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR001766
all species →
DomainFork head domainInterproscan
IPR030456
all species →
Conserved_siteFork head domain conserved site 2Interproscan
IPR017452
all species →
DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR000276
all species →
FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR016040
all species →
DomainNAD(P)-binding domainInterproscan
IPR051606
all species →
FamilyPolyketide Oxidoreductase-likeInterproscan
IPR036291
all species →
Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR043502
all species →
Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477
all species →
DomainReverse transcriptase domainInterproscan
IPR000719
all species →
DomainProtein kinase domainInterproscan
IPR008271
all species →
Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR011009
all species →
Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR017441
all species →
Binding_siteProtein kinase, ATP binding siteInterproscan
IPR017894
all species →
DomainHTH domain, IS21 transposase-typeInterproscan
IPR001584
all species →
DomainIntegrase, catalytic coreInterproscan
IPR036397
all species →
Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR050951
all species →
FamilyRetrovirus-related Pol polyproteinInterproscan
IPR012337
all species →
Homologous_superfamilyRibonuclease H-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24020
all species →
COLLAGEN ALPHAInterproscan
PTHR13962
all species →
FORKHEAD BOX PROTEIN N3-LIKE PROTEIN-RELATEDInterproscan
PTHR24246
all species →
OLFACTORY RECEPTOR AND ADENOSINE RECEPTORInterproscan
PTHR43355
all species →
FLAVIN REDUCTASE (NADPH)Interproscan
PTHR47027
all species →
REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR24347
all species →
SERINE/THREONINE-PROTEIN KINASEInterproscan
PTHR35004
all species →
TRANSPOSASE RV3428C-RELATEDInterproscan
PTHR33332
all species →
REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR37984
all species →
PROTEIN CBG26694Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005201
all species →
Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005581
all species →
Cellular Componentcollagen trimerInterproscan
GO:0000987
all species →
Molecular Functioncis-regulatory region sequence-specific DNA bindingInterproscan
GO:0003700
all species →
Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0006355
all species →
Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0043565
all species →
Molecular Functionsequence-specific DNA bindingInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0004930
all species →
Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186
all species →
Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0005887
all species →
Cellular Componentplasma membraneInterproscan
GO:0004074
all species →
Molecular Functionbiliverdin reductase [NAD(P)+] activityInterproscan
GO:0016646
all species →
Molecular Functionoxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptorInterproscan
GO:0042602
all species →
Molecular Functionriboflavin reductase (NADPH) activityInterproscan
GO:0004672
all species →
Molecular Functionprotein kinase activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0006468
all species →
Biological Processprotein phosphorylationInterproscan
GO:0015074
all species →
Biological ProcessDNA integrationInterproscan
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09407FOXN; forkhead box protein N-Transcription factorsko03000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.sequence table not available
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.sequence table not available
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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