Gene detail

Detailed information of g9646.t1 in Montipora capitata

Genomic Location: Sc0000255:316839...327657
NR annotation: XP_020624400.1, cytosolic phospholipase A2-like isoform X2 [Orbicella faveolata]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g9646.t1

atgccctctctccgagaaactaagtggttgtctggccgtctggacacctacgacccttttacatttcccaattcgctgactggcttactgcatggagagaaatggcatacttacttttttcttcaagttgaccctccagatccgtatgtcaagttgtacatcagaactgctccaaatggtaaaaaacgaaccaaagcgataaaaaacaatccaaacccagtatgggaagaagagttccagttccatcttgatccaaattttaaaaacatactagaattaaagctgatggattcacacaggctcagtgatgacttggtggatgccgaggcgtttgaactaaacgacctagaactcgataaaccgtacttttttactttcaaattccgcaagctttcagaggtagatgttgaaatgaaagttggaacatgcattgcaccatttgacctgcgatacggcttggatctatgtgacgaggaaaaggagttcatacagaagagaaagcaagtagtttttgaagcaatgaagaagttcctaggtaatgatggaccaaaaaatttgaatgaggtgcccaatatcgcagtgctggggtctgggggtggatttcgtgctatggtatctctaagtggagtattctgtgctcttaaagacatgggtctgttggattgcaccatgtatgctgcaggactctctggttcagcgtggtatctctccacgttgtactctcaccccgagtggccaaattgtcatccaaggaagattagtgaacagttgggtaaaaacgtggagaagaactggttgaggatgatgttgactccatcgtggcttcgtaatcgcctcaaggacattctgaagaagaagtcacgtggccagcctgtcagttttactgatttttttggttacctcatctcggacacaattttgaaagatctgatgagggaacctttgcttgctttattcatagaatggatggaatttagcccatatgaaataggaatggacaaatacggcacttttatgaagactgaacattttgggagcaagtttttctgtggcaagcttttaactccgtatcctgaacccacacttgcctacctgcaaggcatatggggcagtgcattcaccattctgctgcaaagagtactcaacgagggaagactgcctgatgacactaacaagagaaagagtaacgcgggtgacttgagacaagaattggatggtatgattaattcagaagatgtcttgcccgtacgagaggaggagcacagtgacgaagaagaagatttagatgttacagatgggaaaacagaagaagaactaactgaagttgatgataaggatcacgaatgtttgagaagaataatggagacctttgtggagaaaattccctttctcaaaacacgctctggccgagcaggattggtgcacaactttatgcgaggacttcaagtgatcttgactgccccagtccattcggtggaagaagtcagtgaagccgctgacctattgagtcttcaagcaaagcggatctacttggtagacagtggactcgtgtttaattctccatacacaccgctcttgagacccgaaagagacgtggacatttttttctcctttgacttcagcgcgcgagacaaagatgacgagatgcctttctcagagcttttgcttgcagagaaatgggcgagaaaaaaccatatgaaatttcctcccatggacgctgaggaacaatataaaaagtatggaatgaaagagttttacttgttctcagaccctgatgatcctacatgtcctgtgatagttcactttgtgctcatcaataagacttttaaggatcaaaaacttccaggggttgctcgcgaaacccacgaagagaagaaattcggtgatttctcggtatttgaagatcctgacaatcattacagcacattcaacttccattatccacaaaagtcatttgaccgtctgcagaagctgaatgagttcaacacagttcttgcagagcacaccatccgagatgtcatagcagatggcgtaaagaggcgacggcagcgcttagcagtggaaaagaaggatgctaatgaagcctga

Transcript

g9646.t1

ATGCCCTCTCTCCGAGAAACTAAGTGGTTGTCTGGCCGTCTGGACACCTACGACCCTTTTACATTTCCCAATTCGCTGACTGGCTTACTGCATGGAGAGAAATGGCATACTTACTTTTTTCTTCAAGTTGACCCTCCAGATCCGTATGTCAAGTTGTACATCAGAACTGCTCCAAATGGTAAAAAACGAACCAAAGCGATAAAAAACAATCCAAACCCAGTATGGGAAGAAGAGTTCCAGTTCCATCTTgatccaaattttaaaaacatactAGAATTAAAGCTGATGGATTCACACAGGCTCAGTGATGACTTGGTGGATGCCGAGGCGTTTGAACTAAACGACCTAGAACTCGATAAACCGTActtttttactttcaaattcCGCAAGCTTTCAGAGGTAGatgttgaaatgaaagttggaacATGCATTGCACCATTTGACCTGCGATACGGCTTGGATCTATGTGACGAGGAAAAGGAGTTCATACAGAAGAGAAAGCAAGTAGTTTTTGAAGCAATGAAGAAGTTCCTAGGTAATGATGGACCAAAAAATTTGAATGAGGTGCCCAATATCGCAGTGCTGGGGTCTGGGGGTGGATTTCGTGCTATGGTATCTCTAAGTGGAGTATTCTGTGCTCTTAAAGACATGGGTCTGTTGGATTGCACCATGTATGCTGCAGGACTCTCTGGTTCAGCGTGGTATCTCTCCACGTTGTACTCTCACCCCGAGTGGCCAAATTGTCATCCAAGGAAGATTAGTGAACAGTTGGGTAAAAACGTGGAGAAGAACTGGTTGAGGATGATGTTGACTCCATCGTGGCTTCGTAATCGCCTCAAGGACATTCTGAAGAAGAAGTCACGTGGCCAGCCTGTCAGTTTTACTGATTTTTTTGGTTACCTCATCTCGGACACAATTTTGAAAGATCTGATGAGGGAACCTTTGCTTGCTTTATTCATAGAATGGATGGAATTTAGCCCATATGAAATAGGAATGGACAAATACGGCACTTTTATGAAGACTGAACATTTTGGGAGCAAGTTTTTCTGTGGCAAGCTTTTAACTCCGTATCCTGAACCCACACTTGCCTACCTGCAAGGCATATGGGGCAGTGCATTCACCATTCTGCTGCAAAGAGTACTCAACGAGGGAAGACTGCCTGATGACACTAACAAGAGAAAGAGTAACGCGGGTGACTTGAGACAAGAATTGGATGGTATGATTAATTCAGAAGATGTCTTGCCCGTACGAGAGGAGGAGCACAGTGACGAAGAAGAAGATTTAGATGTTACAGATGGGAAAACAGAAGAAGAACTAACTGAAGTTGATGATAAGGATCACGAATGTTTGAGAAGAATAATGGAGACCTTTGTGGAGAAAATTCCCTTTCTCAAAACACGCTCTGGCCGAGCAGGATTGGTGCACAACTTTATGCGAGGACTTCAAGTGATCTTGACTGCCCCAGTCCATTCGGTGGAAGAAGTCAGTGAAGCCGCTGACCTATTGAGTCTTCAAGCAAAGCGGATCTACTTGGTAGACAGTGGACTCGTGTTTAATTCTCCATACACACCGCTCTTGAGACCCGAAAGAGACGTGgacatttttttctcctttgACTTCAGCGCGCGAGACAAAGATGACGAGATGCCTTTCTCAGAGCTTTTGCTTGCAGAGAAATGGGCGAGAAAAAACCATATGAAATTTCCTCCCATGGACGCTGAGGAACAATATAAAAAGTATGGAATGAAAGAGTTTTACTTGTTCTCAGACCCTGATGATCCTACATGTCCTGTGATAGTTCACTTTGTGCTCATCAATAAGACTTTTAAGGATCAAAAACTTCCAGggGTTGCTCGCGAAACCCACGAAGAGAAGAAATTCGGTGATTTCTCGGTATTTGAAGATCCTGACAATCATTACAGCACATTCAACTTCCATTATCCACAAAAGTCATTTGACCGTCTGCAGAAGCTGAATGAGTTCAACACAGTTCTTGCAGAGCACACCATCCGAGATGTCATAGCAGATGGCGTAAAGAGGCGACGGCAGCGCTTAGCAGTGGAAAAGAAGGATGCTAATGAAGCCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B1WAZ6	Cytosolic phospholipase A2 OS=Xenopus tropicalis OX=8364 GN=pla2g4a PE=2 SV=1
P47713	Cytosolic phospholipase A2 OS=Mus musculus OX=10090 GN=Pla2g4a PE=1 SV=1
Q9TT38	Cytosolic phospholipase A2 OS=Oryctolagus cuniculus OX=9986 GN=PLA2G4A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001136 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF01735 all species →	PLA2_B	Lysophospholipase catalytic domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR002642 all species →	Domain	Lysophospholipase, catalytic domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR016035 all species →	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10728 all species →	CYTOSOLIC PHOSPHOLIPASE A2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004620 all species →	Molecular Function	phospholipase activity	Interproscan
GO:0009395 all species →	Biological Process	phospholipid catabolic process	Interproscan
GO:0004623 all species →	Molecular Function	phospholipase A2 activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005544 all species →	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0046475 all species →	Biological Process	glycerophospholipid catabolic process	Interproscan
GO:0047498 all species →	Molecular Function	calcium-dependent phospholipase A2 activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16342	PLA2G4, CPLA2; cytosolic phospholipase A2	EC:3.1.1.4	Choline metabolism in cancer	ko05231	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g9646.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

17TPM > 0

3Conditions

11.3Max TPM

1.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	9	1.51	11.24
whole organisms · low pH treatment	15	4	1.68	8.68
whole organisms · extra low pH treatment pH treatment	12	4	2.46	11.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	11.24
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	9.36
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	8.16
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	0.97
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	0.66
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	0.48
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	0.36
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	0.32
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	0.22
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.00
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	0.00
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.00
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	0.00
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	0.00
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	0.00
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	0.00
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.00
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.00
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.00
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	0.00
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	0.00
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	8.68
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	8.41
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	7.99
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	0.19
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.00
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.00
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.00
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	0.00
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	0.00
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	0.00
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	0.00
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	0.00
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	0.00
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	0.00
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	0.00
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	11.30
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	9.21
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	8.60
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	0.45
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.